Create paths for external repositories in a way that is forward and backward compatible

We explicitly don't do this when targeting .NET 3.5, where the
interface doesn't exist.

No implementation is required, as we're already implementing
everything we need for IList<T>.

Add Oneof custom options test

Add python compatibility tests against v2.5.0

Allow OneofOptions to be extended in proto3.

Adds nullability modifiers to resolve Xcode 8.3 warnings

Fixes #2625 

Bazel is changing the way the execution root is organized (see https://github.com/bazelbuild/bazel/issues/1681
for details) and this updates the protobuf path logic to work with both old
and new versions of Bazel.

Set LIBPROTOBUF_EXPORT on GzipOutputStream::Options

This fixes issue #2610.

This consists of:
- Changing the codegen for the fixed set of options protos, to parse unknown fields instead of skipping them
- Add a new CustomOptions type in the C# support library
- Expose CustomOptions properties from the immutable proto wrappers in the support library

Only single-value options are currently supported, and fetching options values requires getting the type right
and knowing the field number. Both of these can be addressed at a later time.

Fixes #2143, at least as a first pass.

Timestamp helper fix, Duration helper cleanup.

- The Timestamp proto does not allow for negative nanos fields, so the seconds
  must be shifted and a positive nanos then applied.
- Tweak the helpers on Duration to make it clear there is no "base" time
  involved.
- Update the unittests for duration and timestamp to cover positive and
  negative NSTimeIntervals and what their impact is on the protos.

Revert "Fix Timestamps with dates before the Unix epoch that contain fractional seconds."

Fix Timestamps with dates before the Unix epoch that contain fractional seconds.

The Timestamp proto does not allow for negative nanos fields, so the seconds must be shifted and
a positive nanos then applied.

Add a proto_lang_toolchain for Java

This allows easy use of Bazel's java_proto_library native rule.

Class deprecation support

Fixed "make distcheck" for the Autotools build

Fixes #2088.

We now have separate tests for netcoreapp and net45 to test the two branches here.
(netstandard10 doesn't have MemoryStream.GetBuffer)

Although most of this library doesn't have any async functionality,
this feels like a natural place to locally add it.

To make the test pass I needed to fix out-of-tree builds and update
EXTRA_DIST and CLEANFILES.

* fix int64 decoding

* fix int64 decoding + tests

* Fix generation of extending nested messages in JavaScript

* Added missing test8.proto to build

* A few more cases for binary conformance tests.

* over-encoded varints (encoded in more bytes than are necessary).
* truncated varints (>32 bits for 32-bit types).

* Fixed Python decoding bug with 32-bit varints.

* Fixed 1L -> 1LL for 32-bit platforms.

Fixed cross compilations with the Autotools build

Minor fix for autocreated object repeated fields and maps.

- If setting/clearing a repeated field/map that was objects, check the class
  before checking the autocreator.
- Just to be paranoid, don’t mutate within copy/mutableCopy for the autocreated
  classes to ensure there is less chance of issues if someone does something
  really crazy threading wise.
- Some more tests for the internal AutocreatedArray/AutocreatedDictionary
  classes to ensure things are working as expected.
- Add Xcode 8.2 to the full_mac_build.sh supported list.

Add link to Elm proto plugin

Fix include in auto-generated well_known_types_embed.cc