Return uint32 from Log2FloorNonZero64

Add Ruby compatibilty test against 3.0.0.

Handing threading race resolving methods.

- Don't prune the extension registry as that can lead to failures when two
  threads are racing.
- If adding the method fails, check and see if it already is bound to decide
  the return result. Deals with threading races binding the methods.

A uint32 is big enough to hold any return value from that function, and
doing it this way prevents compiler warnings in coded_stream.h about
narrowing a uint64 to a uint32.

Use closurebuilder.py in favor of calcdeps.py for compiling JavaScript

Disable static analyzer for message semaphore creation

* Fix gcc 4.1.2 compilation of map_field_inl.h

Fixes "error: object missing in reference to '...'" errors from #1035

* Disable 64-bit map keys on gcc <= 4.1

* Add missing case statements

This is both more correct, and the build fails on AIX without it

This method merges the contents of the specified message into the
current message. Singular fields that are set in the specified message
overwrite the corresponding fields in the current message.  Repeated
fields are appended. Map fields key-value pairs are overritten.
Singular/Oneof sub-messages are recursively merged. All overritten
sub-messages are deep-copied.

There are two motivations for this:
1) calcdeps.py is deprecated and replaced by closurebuilder.py.
2) As part of this I was able to tweak things so that the Closure
compiler does not attempt to examine every .js file in the tree under
js/. This makes it possible to put compatibility tests and related files
in a subdirectory without them getting mixed up with the main .js files
we care about.

Removed log statement from writer_test.js

This tweak makes the test output a bit easier to read because it cuts
out a lot of unnecessary logging.

Remove the use of C++11 features.

Fix links to the license in meta-data

There might be duplicated enum values when allow_alias is true. Add PreferredAlias into OriginalNameAttribute to remove the duplication (#2727)

The first is the newer name, which is also more telling.

The "New BSD License" is the "3-Clause BSD License", but the links were
pointing to the "2-Clause BSD License".

Disable MSVC warning C4309

Fix unresolved symbols with MSVC12 and /Zc:inline

Speed up JSON parsing.

const FieldDescriptorCompare

Fix unused variables warnings in generated_message_reflection.h

README.md: Make docs URL a link

FreeBSD compatibility

Add GPBMessageDropUnknownFieldsRecursively() and tests.

GPBMessageDropUnknownFieldsRecursively() is a new helper to drop the
unknownFields from a message and all sub messages (in fields or extensions).

- Adding more detail on running tests
- Adding info about the status of .NET 3.5 support and how to enable .NET 3.5

NUnit 3.4.0 —> 3.6.0
dotnet-test-nunit 3.4.0-alpha-2 —> 3.4.0-beta-3

* Changing DOTNET35 framework symbols in preprocessor directives to the default built-in value of NET35.
* Adding extension method StreamExtension.CopyTo for .NET 3.5 because it didn’t exist until .NET 4, and adding associated unit tests.

Add an option to always print enums as ints in Json API

https://github.com/google/protobuf/issues/2735

Dedent URL so it renders as a link and not as code (fixed width font and not clickable).