Add support for outputting dependency manifest files, used by ninja and make
Use --manifest-file=somefile.d to output the dependency manifest. This file will contain a list of files which were read by protoc as part of creating the output files. It doesn't include the plugin inputs if plugins are used, that could be a later extension. The manifest file is in the format <output file>: <input files>. The manifest file format only allows you to specify one output file, which isn't a problem as it's used to detect input changes in order to detect when to rerun the protoc command. The output file used in the manifest is the manifest filename itself; to use this in ninja you should declare the manifest file as the first output as well as the depfile input.
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