shape: move to opencv_contrib

https://github.com/opencv/opencv/commit/6c8ec5336f50fca49669fab14fc7bcb69964c224

modules/shape/CMakeLists.txt

+set(the_description "Shape descriptors and matchers")
+ocv_define_module(shape opencv_core opencv_imgproc opencv_calib3d WRAP python)

modules/shape/include/opencv2/shape.hpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                           License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000-2008, Intel Corporation, all rights reserved.
+// Copyright (C) 2009-2012, Willow Garage Inc., all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of the copyright holders may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#ifndef OPENCV_SHAPE_HPP
+#define OPENCV_SHAPE_HPP
+
+#include "opencv2/shape/emdL1.hpp"
+#include "opencv2/shape/shape_transformer.hpp"
+#include "opencv2/shape/hist_cost.hpp"
+#include "opencv2/shape/shape_distance.hpp"
+
+/**
+  @defgroup shape Shape Distance and Matching
+ */
+
+#endif
+
+/* End of file. */

modules/shape/include/opencv2/shape/emdL1.hpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                           License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000-2008, Intel Corporation, all rights reserved.
+// Copyright (C) 2009-2012, Willow Garage Inc., all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of the copyright holders may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#ifndef OPENCV_EMD_L1_HPP
+#define OPENCV_EMD_L1_HPP
+
+#include "opencv2/core.hpp"
+
+namespace cv
+{
+/****************************************************************************************\
+*                                   EMDL1 Function                                      *
+\****************************************************************************************/
+
+//! @addtogroup shape
+//! @{
+
+/** @brief Computes the "minimal work" distance between two weighted point configurations base on the papers
+"EMD-L1: An efficient and Robust Algorithm for comparing histogram-based descriptors", by Haibin
+Ling and Kazunori Okuda; and "The Earth Mover's Distance is the Mallows Distance: Some Insights from
+Statistics", by Elizaveta Levina and Peter Bickel.
+
+@param signature1 First signature, a single column floating-point matrix. Each row is the value of
+the histogram in each bin.
+@param signature2 Second signature of the same format and size as signature1.
+ */
+CV_EXPORTS float EMDL1(InputArray signature1, InputArray signature2);
+
+//! @}
+
+}//namespace cv
+
+#endif

modules/shape/include/opencv2/shape/hist_cost.hpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                          License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000-2008, Intel Corporation, all rights reserved.
+// Copyright (C) 2009, Willow Garage Inc., all rights reserved.
+// Copyright (C) 2013, OpenCV Foundation, all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of the copyright holders may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#ifndef OPENCV_HIST_COST_HPP
+#define OPENCV_HIST_COST_HPP
+
+#include "opencv2/imgproc.hpp"
+
+namespace cv
+{
+
+//! @addtogroup shape
+//! @{
+
+/** @brief Abstract base class for histogram cost algorithms.
+ */
+class CV_EXPORTS_W HistogramCostExtractor : public Algorithm
+{
+public:
+    CV_WRAP virtual void buildCostMatrix(InputArray descriptors1, InputArray descriptors2, OutputArray costMatrix) = 0;
+
+    CV_WRAP virtual void setNDummies(int nDummies) = 0;
+    CV_WRAP virtual int getNDummies() const = 0;
+
+    CV_WRAP virtual void setDefaultCost(float defaultCost) = 0;
+    CV_WRAP virtual float getDefaultCost() const = 0;
+};
+
+/** @brief A norm based cost extraction. :
+ */
+class CV_EXPORTS_W NormHistogramCostExtractor : public HistogramCostExtractor
+{
+public:
+    CV_WRAP virtual void setNormFlag(int flag) = 0;
+    CV_WRAP virtual int getNormFlag() const = 0;
+};
+
+CV_EXPORTS_W Ptr<HistogramCostExtractor>
+    createNormHistogramCostExtractor(int flag=DIST_L2, int nDummies=25, float defaultCost=0.2f);
+
+/** @brief An EMD based cost extraction. :
+ */
+class CV_EXPORTS_W EMDHistogramCostExtractor : public HistogramCostExtractor
+{
+public:
+    CV_WRAP virtual void setNormFlag(int flag) = 0;
+    CV_WRAP virtual int getNormFlag() const = 0;
+};
+
+CV_EXPORTS_W Ptr<HistogramCostExtractor>
+    createEMDHistogramCostExtractor(int flag=DIST_L2, int nDummies=25, float defaultCost=0.2f);
+
+/** @brief An Chi based cost extraction. :
+ */
+class CV_EXPORTS_W ChiHistogramCostExtractor : public HistogramCostExtractor
+{};
+
+CV_EXPORTS_W Ptr<HistogramCostExtractor> createChiHistogramCostExtractor(int nDummies=25, float defaultCost=0.2f);
+
+/** @brief An EMD-L1 based cost extraction. :
+ */
+class CV_EXPORTS_W EMDL1HistogramCostExtractor : public HistogramCostExtractor
+{};
+
+CV_EXPORTS_W Ptr<HistogramCostExtractor>
+    createEMDL1HistogramCostExtractor(int nDummies=25, float defaultCost=0.2f);
+
+//! @}
+
+} // cv
+#endif

modules/shape/include/opencv2/shape/shape.hpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                          License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000-2008, Intel Corporation, all rights reserved.
+// Copyright (C) 2009, Willow Garage Inc., all rights reserved.
+// Copyright (C) 2013, OpenCV Foundation, all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of the copyright holders may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#ifdef __OPENCV_BUILD
+#error this is a compatibility header which should not be used inside the OpenCV library
+#endif
+
+#include "opencv2/shape.hpp"

modules/shape/include/opencv2/shape/shape_transformer.hpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                          License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000-2008, Intel Corporation, all rights reserved.
+// Copyright (C) 2009, Willow Garage Inc., all rights reserved.
+// Copyright (C) 2013, OpenCV Foundation, all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of the copyright holders may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#ifndef OPENCV_SHAPE_SHAPE_TRANSFORM_HPP
+#define OPENCV_SHAPE_SHAPE_TRANSFORM_HPP
+#include <vector>
+#include "opencv2/core.hpp"
+#include "opencv2/imgproc.hpp"
+
+namespace cv
+{
+
+//! @addtogroup shape
+//! @{
+
+/** @brief Abstract base class for shape transformation algorithms.
+ */
+class CV_EXPORTS_W ShapeTransformer : public Algorithm
+{
+public:
+    /** @brief Estimate the transformation parameters of the current transformer algorithm, based on point matches.
+
+    @param transformingShape Contour defining first shape.
+    @param targetShape Contour defining second shape (Target).
+    @param matches Standard vector of Matches between points.
+     */
+    CV_WRAP virtual void estimateTransformation(InputArray transformingShape, InputArray targetShape,
+                                                 std::vector<DMatch>& matches) = 0;
+
+    /** @brief Apply a transformation, given a pre-estimated transformation parameters.
+
+    @param input Contour (set of points) to apply the transformation.
+    @param output Output contour.
+     */
+    CV_WRAP virtual float applyTransformation(InputArray input, OutputArray output=noArray()) = 0;
+
+    /** @brief Apply a transformation, given a pre-estimated transformation parameters, to an Image.
+
+    @param transformingImage Input image.
+    @param output Output image.
+    @param flags Image interpolation method.
+    @param borderMode border style.
+    @param borderValue border value.
+     */
+    CV_WRAP virtual void warpImage(InputArray transformingImage, OutputArray output,
+                                   int flags=INTER_LINEAR, int borderMode=BORDER_CONSTANT,
+                                   const Scalar& borderValue=Scalar()) const = 0;
+};
+
+/***********************************************************************************/
+/***********************************************************************************/
+
+/** @brief Definition of the transformation
+
+occupied in the paper "Principal Warps: Thin-Plate Splines and Decomposition of Deformations", by
+F.L. Bookstein (PAMI 1989). :
+ */
+class CV_EXPORTS_W ThinPlateSplineShapeTransformer : public ShapeTransformer
+{
+public:
+    /** @brief Set the regularization parameter for relaxing the exact interpolation requirements of the TPS
+    algorithm.
+
+    @param beta value of the regularization parameter.
+     */
+    CV_WRAP virtual void setRegularizationParameter(double beta) = 0;
+    CV_WRAP virtual double getRegularizationParameter() const = 0;
+};
+
+/** Complete constructor */
+CV_EXPORTS_W Ptr<ThinPlateSplineShapeTransformer>
+    createThinPlateSplineShapeTransformer(double regularizationParameter=0);
+
+/***********************************************************************************/
+/***********************************************************************************/
+
+/** @brief Wrapper class for the OpenCV Affine Transformation algorithm. :
+ */
+class CV_EXPORTS_W AffineTransformer : public ShapeTransformer
+{
+public:
+    CV_WRAP virtual void setFullAffine(bool fullAffine) = 0;
+    CV_WRAP virtual bool getFullAffine() const = 0;
+};
+
+/** Complete constructor */
+CV_EXPORTS_W Ptr<AffineTransformer> createAffineTransformer(bool fullAffine);
+
+//! @}
+
+} // cv
+#endif

modules/shape/src/aff_trans.cpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                           License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000-2008, Intel Corporation, all rights reserved.
+// Copyright (C) 2009, Willow Garage Inc., all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of the copyright holders may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#include "precomp.hpp"
+
+namespace cv
+{
+
+class AffineTransformerImpl : public AffineTransformer
+{
+public:
+    /* Constructors */
+    AffineTransformerImpl()
+    {
+        fullAffine = true;
+        name_ = "ShapeTransformer.AFF";
+        transformCost = 0;
+    }
+
+    AffineTransformerImpl(bool _fullAffine)
+    {
+        fullAffine = _fullAffine;
+        name_ = "ShapeTransformer.AFF";
+        transformCost = 0;
+    }
+
+    /* Destructor */
+    ~AffineTransformerImpl()
+    {
+    }
+
+    //! the main operator
+    virtual void estimateTransformation(InputArray transformingShape, InputArray targetShape, std::vector<DMatch> &matches) CV_OVERRIDE;
+    virtual float applyTransformation(InputArray input, OutputArray output=noArray()) CV_OVERRIDE;
+    virtual void warpImage(InputArray transformingImage, OutputArray output,
+                           int flags, int borderMode, const Scalar& borderValue) const CV_OVERRIDE;
+
+    //! Setters/Getters
+    virtual void setFullAffine(bool _fullAffine) CV_OVERRIDE {fullAffine=_fullAffine;}
+    virtual bool getFullAffine() const CV_OVERRIDE {return fullAffine;}
+
+    //! write/read
+    virtual void write(FileStorage& fs) const CV_OVERRIDE
+    {
+        writeFormat(fs);
+        fs << "name" << name_
+           << "affine_type" << int(fullAffine);
+    }
+
+    virtual void read(const FileNode& fn) CV_OVERRIDE
+    {
+        CV_Assert( (String)fn["name"] == name_ );
+        fullAffine = int(fn["affine_type"])?true:false;
+    }
+
+private:
+    bool fullAffine;
+    Mat affineMat;
+    float transformCost;
+
+protected:
+    String name_;
+};
+
+void AffineTransformerImpl::warpImage(InputArray transformingImage, OutputArray output,
+                                      int flags, int borderMode, const Scalar& borderValue) const
+{
+    CV_INSTRUMENT_REGION();
+
+    CV_Assert(!affineMat.empty());
+    warpAffine(transformingImage, output, affineMat, transformingImage.getMat().size(), flags, borderMode, borderValue);
+}
+
+
+static Mat _localAffineEstimate(const std::vector<Point2f>& shape1, const std::vector<Point2f>& shape2,
+                                bool fullAfine)
+{
+    Mat out(2,3,CV_32F);
+    int siz=2*(int)shape1.size();
+
+    if (fullAfine)
+    {
+        Mat matM(siz, 6, CV_32F);
+        Mat matP(siz,1,CV_32F);
+        int contPt=0;
+        for (int ii=0; ii<siz; ii++)
+        {
+            Mat therow = Mat::zeros(1,6,CV_32F);
+            if (ii%2==0)
+            {
+                therow.at<float>(0,0)=shape1[contPt].x;
+                therow.at<float>(0,1)=shape1[contPt].y;
+                therow.at<float>(0,2)=1;
+                therow.row(0).copyTo(matM.row(ii));
+                matP.at<float>(ii,0) = shape2[contPt].x;
+            }
+            else
+            {
+                therow.at<float>(0,3)=shape1[contPt].x;
+                therow.at<float>(0,4)=shape1[contPt].y;
+                therow.at<float>(0,5)=1;
+                therow.row(0).copyTo(matM.row(ii));
+                matP.at<float>(ii,0) = shape2[contPt].y;
+                contPt++;
+            }
+        }
+        Mat sol;
+        solve(matM, matP, sol, DECOMP_SVD);
+        out = sol.reshape(0,2);
+    }
+    else
+    {
+        Mat matM(siz, 4, CV_32F);
+        Mat matP(siz,1,CV_32F);
+        int contPt=0;
+        for (int ii=0; ii<siz; ii++)
+        {
+            Mat therow = Mat::zeros(1,4,CV_32F);
+            if (ii%2==0)
+            {
+                therow.at<float>(0,0)=shape1[contPt].x;
+                therow.at<float>(0,1)=shape1[contPt].y;
+                therow.at<float>(0,2)=1;
+                therow.row(0).copyTo(matM.row(ii));
+                matP.at<float>(ii,0) = shape2[contPt].x;
+            }
+            else
+            {
+                therow.at<float>(0,0)=shape1[contPt].y;
+                therow.at<float>(0,1)=-shape1[contPt].x;
+                therow.at<float>(0,3)=1;
+                therow.row(0).copyTo(matM.row(ii));
+                matP.at<float>(ii,0) = shape2[contPt].y;
+                contPt++;
+            }
+        }
+        Mat sol;
+        solve(matM, matP, sol, DECOMP_SVD);
+        out.at<float>(0,0)=sol.at<float>(0,0);
+        out.at<float>(0,1)=sol.at<float>(1,0);
+        out.at<float>(0,2)=sol.at<float>(2,0);
+        out.at<float>(1,0)=-sol.at<float>(1,0);
+        out.at<float>(1,1)=sol.at<float>(0,0);
+        out.at<float>(1,2)=sol.at<float>(3,0);
+    }
+    return out;
+}
+
+void AffineTransformerImpl::estimateTransformation(InputArray _pts1, InputArray _pts2, std::vector<DMatch>& _matches)
+{
+    CV_INSTRUMENT_REGION();
+
+    Mat pts1 = _pts1.getMat();
+    Mat pts2 = _pts2.getMat();
+    CV_Assert((pts1.channels()==2) && (pts1.cols>0) && (pts2.channels()==2) && (pts2.cols>0));
+    CV_Assert(_matches.size()>1);
+
+    if (pts1.type() != CV_32F)
+        pts1.convertTo(pts1, CV_32F);
+    if (pts2.type() != CV_32F)
+        pts2.convertTo(pts2, CV_32F);
+
+    // Use only valid matchings //
+    std::vector<DMatch> matches;
+    for (size_t i=0; i<_matches.size(); i++)
+    {
+        if (_matches[i].queryIdx<pts1.cols &&
+            _matches[i].trainIdx<pts2.cols)
+        {
+            matches.push_back(_matches[i]);
+        }
+    }
+
+    // Organizing the correspondent points in vector style //
+    std::vector<Point2f> shape1; // transforming shape
+    std::vector<Point2f> shape2; // target shape
+    for (size_t i=0; i<matches.size(); i++)
+    {
+        Point2f pt1=pts1.at<Point2f>(0,matches[i].queryIdx);
+        shape1.push_back(pt1);
+
+        Point2f pt2=pts2.at<Point2f>(0,matches[i].trainIdx);
+        shape2.push_back(pt2);
+    }
+
+    Mat affine;
+    if (fullAffine)
+    {
+        estimateAffine2D(shape1, shape2).convertTo(affine, CV_32F);
+    } else
+    {
+        estimateAffinePartial2D(shape1, shape2).convertTo(affine, CV_32F);
+    }
+
+    if (affine.empty())
+        //In case there is not good solution, just give a LLS based one
+        affine = _localAffineEstimate(shape1, shape2, fullAffine);
+
+    affineMat = affine;
+}
+
+float AffineTransformerImpl::applyTransformation(InputArray inPts, OutputArray outPts)
+{
+    CV_INSTRUMENT_REGION();
+
+    Mat pts1 = inPts.getMat();
+    CV_Assert((pts1.channels()==2) && (pts1.cols>0));
+
+    //Apply transformation in the complete set of points
+    Mat fAffine;
+    transform(pts1, fAffine, affineMat);
+
+    // Ensambling output //
+    if (outPts.needed())
+    {
+        outPts.create(1,fAffine.cols, CV_32FC2);
+        Mat outMat = outPts.getMat();
+        for (int i=0; i<fAffine.cols; i++)
+            outMat.at<Point2f>(0,i)=fAffine.at<Point2f>(0,i);
+    }
+
+    // Updating Transform Cost //
+    Mat Af(2, 2, CV_32F);
+    Af.at<float>(0,0)=affineMat.at<float>(0,0);
+    Af.at<float>(0,1)=affineMat.at<float>(1,0);
+    Af.at<float>(1,0)=affineMat.at<float>(0,1);
+    Af.at<float>(1,1)=affineMat.at<float>(1,1);
+    SVD mysvd(Af, SVD::NO_UV);
+    Mat singVals=mysvd.w;
+    transformCost=std::log((singVals.at<float>(0,0)+FLT_MIN)/(singVals.at<float>(1,0)+FLT_MIN));
+
+    return transformCost;
+}
+
+Ptr <AffineTransformer> createAffineTransformer(bool fullAffine)
+{
+    return Ptr<AffineTransformer>( new AffineTransformerImpl(fullAffine) );
+}
+
+} // cv

modules/shape/src/emdL1_def.hpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                           License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000-2008, Intel Corporation, all rights reserved.
+// Copyright (C) 2009, Willow Garage Inc., all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of the copyright holders may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#include <stdlib.h>
+#include <math.h>
+#include <vector>
+
+/****************************************************************************************\
+*                                   For EMDL1 Framework                                 *
+\****************************************************************************************/
+typedef struct cvEMDEdge* cvPEmdEdge;
+typedef struct cvEMDNode* cvPEmdNode;
+struct cvEMDNode
+{
+    int pos[3]; // grid position
+    float d; // initial value
+    int u;
+    // tree maintenance
+    int iLevel; // level in the tree, 0 means root
+    cvPEmdNode pParent; // pointer to its parent
+    cvPEmdEdge pChild;
+    cvPEmdEdge pPEdge; // point to the edge coming out from its parent
+};
+struct cvEMDEdge
+{
+    float flow; // initial value
+    int iDir; // 1:outward, 0:inward
+    // tree maintenance
+    cvPEmdNode pParent; // point to its parent
+    cvPEmdNode pChild; // the child node
+    cvPEmdEdge pNxt; // next child/edge
+};
+typedef std::vector<cvEMDNode> cvEMDNodeArray;
+typedef std::vector<cvEMDEdge> cvEMDEdgeArray;
+typedef std::vector<cvEMDNodeArray> cvEMDNodeArray2D;
+typedef std::vector<cvEMDEdgeArray> cvEMDEdgeArray2D;
+typedef std::vector<float> floatArray;
+typedef std::vector<floatArray> floatArray2D;
+
+/****************************************************************************************\
+*                                   EMDL1 Class                                         *
+\****************************************************************************************/
+class EmdL1
+{
+public:
+    EmdL1()
+    {
+        m_pRoot	= NULL;
+        binsDim1 = 0;
+        binsDim2 = 0;
+        binsDim3 = 0;
+        dimension = 0;
+        nMaxIt = 500;
+
+        m_pLeave = 0;
+        m_iEnter = 0;
+        nNBV = 0;
+        m_nItr = 0;
+        m_iTo = 0;
+        m_iFrom = 0;
+        m_pEnter = 0;
+    }
+
+    ~EmdL1()
+    {
+    }
+
+    float getEMDL1(cv::Mat &sig1, cv::Mat &sig2);
+    void setMaxIteration(int _nMaxIt);
+
+private:
+    //-- SubFunctions called in the EMD algorithm
+    bool initBaseTrees(int n1=0, int n2=0, int n3=0);
+    bool fillBaseTrees(float *H1, float *H2);
+    bool greedySolution();
+    bool greedySolution2();
+    bool greedySolution3();
+    void initBVTree();
+    void updateSubtree(cvPEmdNode pRoot);
+    bool isOptimal();
+    void findNewSolution();
+    void findLoopFromEnterBV();
+    float compuTotalFlow();
+
+private:
+    int dimension;
+    int binsDim1, binsDim2, binsDim3; // the histogram contains m_n1 rows and m_n2 columns
+    int nNBV; // number of Non-Basic Variables (NBV)
+    int nMaxIt;
+    cvEMDNodeArray2D m_Nodes; // all nodes
+    cvEMDEdgeArray2D m_EdgesRight; // all edges to right
+    cvEMDEdgeArray2D m_EdgesUp; // all edges to upward
+    std::vector<cvEMDNodeArray2D>	m_3dNodes; // all nodes for 3D
+    std::vector<cvEMDEdgeArray2D>	m_3dEdgesRight; // all edges to right, 3D
+    std::vector<cvEMDEdgeArray2D>	m_3dEdgesUp; // all edges to upward, 3D
+    std::vector<cvEMDEdgeArray2D>	m_3dEdgesDeep; // all edges to deep, 3D
+    std::vector<cvPEmdEdge> m_NBVEdges; // pointers to all NON-BV edges
+    std::vector<cvPEmdNode> m_auxQueue; // auxiliary node queue
+    cvPEmdNode m_pRoot; // root of the BV Tree
+    cvPEmdEdge m_pEnter; // Enter BV edge
+    int m_iEnter; // Enter BV edge, index in m_NBVEdges
+    cvPEmdEdge m_pLeave; // Leave BV edge
+    int m_nItr; // number of iteration
+    // auxiliary variables for searching a new loop
+    std::vector<cvPEmdEdge> m_fromLoop;
+    std::vector<cvPEmdEdge> m_toLoop;
+    int	m_iFrom;
+    int m_iTo;
+};

modules/shape/src/haus_dis.cpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                        Intel License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000, Intel Corporation, all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of Intel Corporation may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#include "precomp.hpp"
+
+namespace cv
+{
+
+class HausdorffDistanceExtractorImpl CV_FINAL : public HausdorffDistanceExtractor
+{
+public:
+    /* Constructor */
+    HausdorffDistanceExtractorImpl(int _distanceFlag = NORM_L1, float _rankProportion=0.6)
+    {
+        distanceFlag = _distanceFlag;
+        rankProportion = _rankProportion;
+        name_ = "ShapeDistanceExtractor.HAU";
+    }
+
+    /* Destructor */
+    ~HausdorffDistanceExtractorImpl()
+    {
+    }
+
+    //! the main operator
+    virtual float computeDistance(InputArray contour1, InputArray contour2) CV_OVERRIDE;
+
+    //! Setters/Getters
+    virtual void setDistanceFlag(int _distanceFlag) CV_OVERRIDE {distanceFlag=_distanceFlag;}
+    virtual int getDistanceFlag() const CV_OVERRIDE {return distanceFlag;}
+
+    virtual void setRankProportion(float _rankProportion) CV_OVERRIDE
+    {
+        CV_Assert((_rankProportion>0) && (_rankProportion<=1));
+        rankProportion=_rankProportion;
+    }
+    virtual float getRankProportion() const CV_OVERRIDE {return rankProportion;}
+
+    //! write/read
+    virtual void write(FileStorage& fs) const CV_OVERRIDE
+    {
+        writeFormat(fs);
+        fs << "name" << name_
+           << "distance" << distanceFlag
+           << "rank" << rankProportion;
+    }
+
+    virtual void read(const FileNode& fn) CV_OVERRIDE
+    {
+        CV_Assert( (String)fn["name"] == name_ );
+        distanceFlag = (int)fn["distance"];
+        rankProportion = (float)fn["rank"];
+    }
+
+private:
+    int distanceFlag;
+    float rankProportion;
+
+protected:
+    String name_;
+};
+
+//! Hausdorff distance for a pair of set of points
+static float _apply(const Mat &set1, const Mat &set2, int distType, double propRank)
+{
+    // Building distance matrix //
+    Mat disMat(set1.cols, set2.cols, CV_32F);
+    int K = int(propRank*(disMat.rows-1));
+
+    for (int r=0; r<disMat.rows; r++)
+    {
+        for (int c=0; c<disMat.cols; c++)
+        {
+            Point2f diff = set1.at<Point2f>(0,r)-set2.at<Point2f>(0,c);
+            disMat.at<float>(r,c) = (float)norm(Mat(diff), distType);
+        }
+    }
+
+    Mat shortest(disMat.rows,1,CV_32F);
+    for (int ii=0; ii<disMat.rows; ii++)
+    {
+        Mat therow = disMat.row(ii);
+        double mindis;
+        minMaxIdx(therow, &mindis);
+        shortest.at<float>(ii,0) = float(mindis);
+    }
+    Mat sorted;
+    cv::sort(shortest, sorted, SORT_EVERY_ROW | SORT_DESCENDING);
+    return sorted.at<float>(K,0);
+}
+
+float HausdorffDistanceExtractorImpl::computeDistance(InputArray contour1, InputArray contour2)
+{
+    CV_INSTRUMENT_REGION();
+
+    Mat set1=contour1.getMat(), set2=contour2.getMat();
+    if (set1.type() != CV_32F)
+        set1.convertTo(set1, CV_32F);
+    if (set2.type() != CV_32F)
+        set2.convertTo(set2, CV_32F);
+    CV_Assert((set1.channels()==2) && (set1.cols>0));
+    CV_Assert((set2.channels()==2) && (set2.cols>0));
+
+    // Force vectors column-based
+    if (set1.dims > 1)
+        set1 = set1.reshape(2, 1);
+    if (set2.dims > 1)
+        set2 = set2.reshape(2, 1);
+
+    return std::max( _apply(set1, set2, distanceFlag, rankProportion),
+                     _apply(set2, set1, distanceFlag, rankProportion) );
+}
+
+Ptr <HausdorffDistanceExtractor> createHausdorffDistanceExtractor(int distanceFlag, float rankProp)
+{
+    return Ptr<HausdorffDistanceExtractor>(new HausdorffDistanceExtractorImpl(distanceFlag, rankProp));
+}
+
+} // cv

modules/shape/src/precomp.hpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                          License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000-2008, Intel Corporation, all rights reserved.
+// Copyright (C) 2009, Willow Garage Inc., all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of the copyright holders may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#ifndef __OPENCV_PRECOMP_H__
+#define __OPENCV_PRECOMP_H__
+
+#include <vector>
+#include <cmath>
+#include <iostream>
+
+#include "opencv2/calib3d.hpp"
+#include "opencv2/imgproc.hpp"
+#include "opencv2/shape.hpp"
+
+#include "opencv2/core/utility.hpp"
+#include "opencv2/core/private.hpp"
+
+#include "opencv2/opencv_modules.hpp"
+
+#endif

modules/shape/src/scd_def.hpp

+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                           License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000-2008, Intel Corporation, all rights reserved.
+// Copyright (C) 2009, Willow Garage Inc., all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of the copyright holders may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+//M*/
+
+#include <stdlib.h>
+#include <math.h>
+#include <vector>
+
+namespace cv
+{
+/*
+ * ShapeContextDescriptor class
+ */
+class SCD
+{
+public:
+    //! the full constructor taking all the necessary parameters
+    explicit SCD(int _nAngularBins=12, int _nRadialBins=5,
+                 double _innerRadius=0.1, double _outerRadius=1, bool _rotationInvariant=false)
+    {
+        setAngularBins(_nAngularBins);
+        setRadialBins(_nRadialBins);
+        setInnerRadius(_innerRadius);
+        setOuterRadius(_outerRadius);
+        setRotationInvariant(_rotationInvariant);
+        meanDistance = 0;
+    }
+
+    void extractSCD(cv::Mat& contour, cv::Mat& descriptors,
+                    const std::vector<int>& queryInliers=std::vector<int>(),
+                    const float _meanDistance=-1);
+
+    int descriptorSize() {return nAngularBins*nRadialBins;}
+    void setAngularBins(int angularBins) { nAngularBins=angularBins; }
+    void setRadialBins(int radialBins) { nRadialBins=radialBins; }
+    void setInnerRadius(double _innerRadius) { innerRadius=_innerRadius; }
+    void setOuterRadius(double _outerRadius) { outerRadius=_outerRadius; }
+    void setRotationInvariant(bool _rotationInvariant) { rotationInvariant=_rotationInvariant; }
+    int getAngularBins() const { return nAngularBins; }
+    int getRadialBins() const { return nRadialBins; }
+    double getInnerRadius() const { return innerRadius; }
+    double getOuterRadius() const { return outerRadius; }
+    bool getRotationInvariant() const { return rotationInvariant; }
+    float getMeanDistance() const { return meanDistance; }
+
+private:
+    int nAngularBins;
+    int nRadialBins;
+    double innerRadius;
+    double outerRadius;
+    bool rotationInvariant;
+    float meanDistance;
+
+protected:
+    void logarithmicSpaces(std::vector<double>& vecSpaces) const;
+    void angularSpaces(std::vector<double>& vecSpaces) const;
+
+    void buildNormalizedDistanceMatrix(cv::Mat& contour,
+                          cv::Mat& disMatrix, const std::vector<int> &queryInliers,
+                          const float _meanDistance=-1);
+
+    void buildAngleMatrix(cv::Mat& contour,
+                              cv::Mat& angleMatrix) const;
+};
+
+/*
+ * Matcher
+ */
+class SCDMatcher
+{
+public:
+    // the full constructor
+    SCDMatcher() : minMatchCost(0)
+    {
+    }
+
+    // the matcher function using Hungarian method
+    void matchDescriptors(cv::Mat& descriptors1,  cv::Mat& descriptors2, std::vector<cv::DMatch>& matches, cv::Ptr<cv::HistogramCostExtractor>& comparer,
+                                      std::vector<int>& inliers1, std::vector<int> &inliers2);
+
+    // matching cost
+    float getMatchingCost() const {return minMatchCost;}
+
+private:
+    float minMatchCost;
+protected:
+    void buildCostMatrix(const cv::Mat& descriptors1, const cv::Mat& descriptors2,
+                                     cv::Mat& costMatrix, cv::Ptr<cv::HistogramCostExtractor>& comparer) const;
+    void hungarian(cv::Mat& costMatrix, std::vector<cv::DMatch>& outMatches, std::vector<int> &inliers1,
+                   std::vector<int> &inliers2, int sizeScd1=0, int sizeScd2=0);
+
+};
+
+}

modules/shape/test/test_main.cpp

+// This file is part of OpenCV project.
+// It is subject to the license terms in the LICENSE file found in the top-level directory
+// of this distribution and at http://opencv.org/license.html.
+#include "test_precomp.hpp"
+
+#if defined(HAVE_HPX)
+    #include <hpx/hpx_main.hpp>
+#endif
+
+CV_TEST_MAIN("cv")

modules/shape/test/test_precomp.hpp

+// This file is part of OpenCV project.
+// It is subject to the license terms in the LICENSE file found in the top-level directory
+// of this distribution and at http://opencv.org/license.html.
+#ifndef __OPENCV_TEST_PRECOMP_HPP__
+#define __OPENCV_TEST_PRECOMP_HPP__
+
+#include "opencv2/ts.hpp"
+#include "opencv2/shape.hpp"
+
+#endif