Basic doxygen documentation support

- updated existing Doxyfile.in
- added corresponding cmake instructions
- added some specific files (layout, icon)
- clean existing doxygen warnings

Conflicts:
	CMakeLists.txt
	doc/CMakeLists.txt
	modules/core/include/opencv2/core.hpp
	modules/core/include/opencv2/core/base.hpp
	modules/core/include/opencv2/core/cuda.inl.hpp
	modules/core/include/opencv2/core/mat.hpp
	modules/core/include/opencv2/core/matx.hpp
	modules/core/include/opencv2/core/types.hpp
	modules/flann/include/opencv2/flann/lsh_table.h
	modules/imgproc/include/opencv2/imgproc.hpp

CMakeLists.txt

@@ -483,8 +483,13 @@ include(cmake/OpenCVFindLibsPerf.cmake)
 # ----------------------------------------------------------------------------
 
 # --- LATEX for pdf documentation ---
+unset(HAVE_DOXYGEN CACHE)
 if(BUILD_DOCS)
   include(cmake/OpenCVFindLATEX.cmake)
+  find_host_program(DOXYGEN_BUILD doxygen)
+  if (DOXYGEN_BUILD)
+    set(HAVE_DOXYGEN 1)
+  endif (DOXYGEN_BUILD)
 endif(BUILD_DOCS)
 
 # --- Python Support ---
@@ -1047,6 +1052,7 @@ if(BUILD_DOCS)
   endif()
   status("    Sphinx:"              HAVE_SPHINX              THEN "${SPHINX_BUILD} (ver ${SPHINX_VERSION})" ELSE NO)
   status("    PdfLaTeX compiler:"   PDFLATEX_COMPILER        THEN "${PDFLATEX_COMPILER}" ELSE NO)
+  status("    Doxygen:"             HAVE_DOXYGEN             THEN "YES (${DOXYGEN_BUILD})" ELSE NO)
 endif()
 
 # ========================== samples and tests ==========================

doc/CMakeLists.txt

-#
+#-----------------------
 #  CMake file for OpenCV docs
-#
+#-----------------------
 
-if(BUILD_DOCS AND HAVE_SPHINX)
+set(HAVE_DOC_GENERATOR BUILD_DOCS AND (HAVE_SPHINX OR HAVE_DOXYGEN))
 
+if(HAVE_DOC_GENERATOR)
   project(opencv_docs)
-
-  set(DOC_LIST
-      "${OpenCV_SOURCE_DIR}/doc/opencv-logo.png"
-      "${OpenCV_SOURCE_DIR}/doc/opencv-logo2.png"
-      "${OpenCV_SOURCE_DIR}/doc/opencv-logo-white.png"
-      "${OpenCV_SOURCE_DIR}/doc/opencv.ico"
-      "${OpenCV_SOURCE_DIR}/doc/pattern.png"
-      "${OpenCV_SOURCE_DIR}/doc/acircles_pattern.png")
-  if(NOT INSTALL_CREATE_DISTRIB)
-    list(APPEND DOC_LIST "${OpenCV_SOURCE_DIR}/doc/haartraining.htm")
-  endif()
-
-  set(OPTIONAL_DOC_LIST "")
-
-
   # build lists of modules to be documented
   set(BASE_MODULES "")
   set(EXTRA_MODULES "")
@@ -32,18 +18,29 @@ if(BUILD_DOCS AND HAVE_SPHINX)
       list(APPEND EXTRA_MODULES ${mod})
     endif()
   endforeach()
-
+  ocv_list_sort(BASE_MODULES)
+  ocv_list_sort(EXTRA_MODULES)
   set(FIXED_ORDER_MODULES core imgproc highgui video calib3d features2d objdetect ml flann gpu photo stitching nonfree contrib legacy)
-
   list(REMOVE_ITEM BASE_MODULES ${FIXED_ORDER_MODULES})
+  set(BASE_MODULES ${FIXED_ORDER_MODULES} ${BASE_MODULES})
 
-  ocv_list_sort(BASE_MODULES)
-  ocv_list_sort(EXTRA_MODULES)
+  set(DOC_LIST
+      "${OpenCV_SOURCE_DIR}/doc/opencv-logo.png"
+      "${OpenCV_SOURCE_DIR}/doc/opencv-logo2.png"
+      "${OpenCV_SOURCE_DIR}/doc/opencv-logo-white.png"
+      "${OpenCV_SOURCE_DIR}/doc/opencv.ico"
+      "${OpenCV_SOURCE_DIR}/doc/pattern.png"
+      "${OpenCV_SOURCE_DIR}/doc/acircles_pattern.png")
+  set(OPTIONAL_DOC_LIST "")
+endif(HAVE_DOC_GENERATOR)
 
-  set(BASE_MODULES ${FIXED_ORDER_MODULES} ${BASE_MODULES})
+# ========= Sphinx docs =========
+if(BUILD_DOCS AND HAVE_SPHINX)
+  if(NOT INSTALL_CREATE_DISTRIB)
+    list(APPEND DOC_LIST "${OpenCV_SOURCE_DIR}/doc/haartraining.htm")
+  endif()
 
   # build lists of documentation files and generate table of contents for reference manual
-
   set(DOC_FAKE_ROOT "${CMAKE_CURRENT_BINARY_DIR}/fake-root")
   set(DOC_FAKE_ROOT_FILES "")
 
@@ -98,7 +95,6 @@ if(BUILD_DOCS AND HAVE_SPHINX)
   if(PDFLATEX_COMPILER)
     add_custom_target(docs
       COMMAND ${SPHINX_BUILD} -b latex -c "${CMAKE_CURRENT_SOURCE_DIR}" "${DOC_FAKE_ROOT}" .
-      COMMAND ${CMAKE_COMMAND} -E copy_directory ${CMAKE_CURRENT_SOURCE_DIR}/pics ${CMAKE_CURRENT_BINARY_DIR}/doc/opencv1/pics
       COMMAND ${CMAKE_COMMAND} -E copy_if_different ${CMAKE_CURRENT_SOURCE_DIR}/mymath.sty ${CMAKE_CURRENT_BINARY_DIR}
       COMMAND ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/patch_refman_latex.py" opencv2refman.tex
       COMMAND ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/patch_refman_latex.py" opencv2manager.tex
@@ -142,12 +138,48 @@ if(BUILD_DOCS AND HAVE_SPHINX)
     set_target_properties(html_docs PROPERTIES FOLDER "documentation")
   endif()
 
+endif()
+
+# ========= Doxygen docs =========
+if(BUILD_DOCS AND HAVE_DOXYGEN)
+  set(candidates)
+  set(all_headers)
+  set(all_images)
+  list(APPEND candidates ${BASE_MODULES} ${EXTRA_MODULES})
+  # blacklisted modules
+  ocv_list_filterout(candidates "^ts$")
+  # gathering headers
+  foreach(m ${candidates})
+    set(all_headers ${all_headers} "${OPENCV_MODULE_opencv_${m}_HEADERS}")
+    set(docs_dir "${OPENCV_MODULE_opencv_${m}_LOCATION}/doc")
+    if(EXISTS ${docs_dir})
+      set(all_images ${all_images} ${docs_dir})
+      set(all_headers ${all_headers} ${docs_dir})
+    endif()
+  endforeach()
+
+  # additional config
+  string(REGEX REPLACE ";" " \\\\\\n" CMAKE_DOXYGEN_INPUT_LIST "${all_headers}")
+  string(REGEX REPLACE ";" " \\\\\\n" CMAKE_DOXYGEN_IMAGE_PATH "${all_images}")
+  set(CMAKE_DOXYGEN_INDEX_MD "${CMAKE_SOURCE_DIR}/README.md")
+  set(CMAKE_DOXYGEN_LAYOUT "${CMAKE_CURRENT_SOURCE_DIR}/DoxygenLayout.xml")
+  set(CMAKE_DOXYGEN_OUTPUT_PATH "doxygen")
+
+  # writing file
+  set(doxyfile "${CMAKE_CURRENT_BINARY_DIR}/Doxyfile")
+  configure_file(Doxyfile.in ${doxyfile} @ONLY)
+
+  add_custom_target(doxygen
+    COMMAND ${DOXYGEN_BUILD} ${doxyfile}
+    DEPENDS ${doxyfile} ${all_headers} ${all_images})
+endif()
+
+if(HAVE_DOC_GENERATOR)
+  # installation
   foreach(f ${DOC_LIST})
     install(FILES "${f}" DESTINATION "${OPENCV_DOC_INSTALL_PATH}" COMPONENT docs)
   endforeach()
-
   foreach(f ${OPTIONAL_DOC_LIST})
     install(FILES "${f}" DESTINATION "${OPENCV_DOC_INSTALL_PATH}" OPTIONAL COMPONENT docs)
   endforeach()
-
-endif()
+endif(HAVE_DOC_GENERATOR)

doc/Doxyfile.in

-# Doxyfile 1.3.9.1
-
-#---------------------------------------------------------------------------
-# Project related configuration options
-#---------------------------------------------------------------------------
-PROJECT_NAME           = opencv
+DOXYFILE_ENCODING      = UTF-8
+PROJECT_NAME           = OpenCV
 PROJECT_NUMBER         = @OPENCV_VERSION@
-OUTPUT_DIRECTORY       = .
-CREATE_SUBDIRS         = NO
+PROJECT_BRIEF          = "Open Source Computer Vision"
+PROJECT_LOGO           = @CMAKE_CURRENT_SOURCE_DIR@/opencv-logo-small.png
+OUTPUT_DIRECTORY       = @CMAKE_DOXYGEN_OUTPUT_PATH@
+CREATE_SUBDIRS         = YES
 OUTPUT_LANGUAGE        = English
 BRIEF_MEMBER_DESC      = YES
-SORT_BRIEF_DOCS        = YES
-#---------------------------------------------------------------------------
-# Build related configuration options
-#---------------------------------------------------------------------------
+REPEAT_BRIEF           = YES
+ABBREVIATE_BRIEF       = "The $name class" \
+                         "The $name widget" \
+                         "The $name file" \
+                         is \
+                         provides \
+                         specifies \
+                         contains \
+                         represents \
+                         a \
+                         an \
+                         the
+ALWAYS_DETAILED_SEC    = NO
+INLINE_INHERITED_MEMB  = NO
+FULL_PATH_NAMES        = NO
+STRIP_FROM_PATH        =
+STRIP_FROM_INC_PATH    =
+SHORT_NAMES            = NO
+JAVADOC_AUTOBRIEF      = NO
+QT_AUTOBRIEF           = NO
+MULTILINE_CPP_IS_BRIEF = NO
+INHERIT_DOCS           = YES
+SEPARATE_MEMBER_PAGES  = NO
+TAB_SIZE               = 4
+ALIASES                =
+TCL_SUBST              =
+OPTIMIZE_OUTPUT_FOR_C  = NO
+OPTIMIZE_OUTPUT_JAVA   = NO
+OPTIMIZE_FOR_FORTRAN   = NO
+OPTIMIZE_OUTPUT_VHDL   = NO
+EXTENSION_MAPPING      =
+MARKDOWN_SUPPORT       = YES
+AUTOLINK_SUPPORT       = NO
+BUILTIN_STL_SUPPORT    = YES
+CPP_CLI_SUPPORT        = NO
+SIP_SUPPORT            = NO
+IDL_PROPERTY_SUPPORT   = YES
+DISTRIBUTE_GROUP_DOC   = NO
+SUBGROUPING            = YES
+INLINE_GROUPED_CLASSES = NO
+INLINE_SIMPLE_STRUCTS  = NO
+TYPEDEF_HIDES_STRUCT   = YES
+LOOKUP_CACHE_SIZE      = 0
 EXTRACT_ALL            = YES
-#---------------------------------------------------------------------------
-# configuration options related to warning and progress messages
-#---------------------------------------------------------------------------
+EXTRACT_PRIVATE        = NO
+EXTRACT_PACKAGE        = NO
+EXTRACT_STATIC         = NO
+EXTRACT_LOCAL_CLASSES  = NO
+EXTRACT_LOCAL_METHODS  = NO
+EXTRACT_ANON_NSPACES   = NO
+HIDE_UNDOC_MEMBERS     = NO
+HIDE_UNDOC_CLASSES     = NO
+HIDE_FRIEND_COMPOUNDS  = NO
+HIDE_IN_BODY_DOCS      = NO
+INTERNAL_DOCS          = NO
+CASE_SENSE_NAMES       = YES
+HIDE_SCOPE_NAMES       = NO
+SHOW_INCLUDE_FILES     = YES
+SHOW_GROUPED_MEMB_INC  = NO
+FORCE_LOCAL_INCLUDES   = NO
+INLINE_INFO            = YES
+SORT_MEMBER_DOCS       = YES
+SORT_BRIEF_DOCS        = NO
+SORT_MEMBERS_CTORS_1ST = NO
+SORT_GROUP_NAMES       = NO
+SORT_BY_SCOPE_NAME     = NO
+STRICT_PROTO_MATCHING  = NO
+GENERATE_TODOLIST      = YES
+GENERATE_TESTLIST      = YES
+GENERATE_BUGLIST       = YES
+GENERATE_DEPRECATEDLIST= YES
+ENABLED_SECTIONS       =
+MAX_INITIALIZER_LINES  = 30
+SHOW_USED_FILES        = YES
+SHOW_FILES             = YES
+SHOW_NAMESPACES        = YES
+FILE_VERSION_FILTER    =
+LAYOUT_FILE            = @CMAKE_DOXYGEN_LAYOUT@
+CITE_BIB_FILES         =
 QUIET                  = NO
 WARNINGS               = YES
 WARN_IF_UNDOCUMENTED   = YES
 WARN_IF_DOC_ERROR      = YES
+WARN_NO_PARAMDOC       = NO
 WARN_FORMAT            = "$file:$line: $text"
 WARN_LOGFILE           =
-#---------------------------------------------------------------------------
-# configuration options related to the input files
-#---------------------------------------------------------------------------
 INPUT                  = @CMAKE_DOXYGEN_INPUT_LIST@
-FILE_PATTERNS          = *.cpp *.h*
-RECURSIVE              = NO
+INPUT_ENCODING         = UTF-8
+FILE_PATTERNS          =
+RECURSIVE              = YES
 EXCLUDE                =
 EXCLUDE_SYMLINKS       = NO
 EXCLUDE_PATTERNS       =
+EXCLUDE_SYMBOLS        = CV_WRAP \
+                         CV_EXPORTS \
+                         CV_EXPORTS_W \
+                         CV_WRAP_AS
 EXAMPLE_PATH           =
-EXAMPLE_PATTERNS       =
+EXAMPLE_PATTERNS       = *
 EXAMPLE_RECURSIVE      = NO
 IMAGE_PATH             = @CMAKE_DOXYGEN_IMAGE_PATH@
 INPUT_FILTER           =
 FILTER_PATTERNS        =
 FILTER_SOURCE_FILES    = NO
-#---------------------------------------------------------------------------
-# configuration options related to the alphabetical class index
-#---------------------------------------------------------------------------
-ALPHABETICAL_INDEX     = YES
+FILTER_SOURCE_PATTERNS =
+USE_MDFILE_AS_MAINPAGE = @CMAKE_DOXYGEN_INDEX_MD@
+SOURCE_BROWSER         = NO
+INLINE_SOURCES         = NO
+STRIP_CODE_COMMENTS    = YES
+REFERENCED_BY_RELATION = NO
+REFERENCES_RELATION    = NO
+REFERENCES_LINK_SOURCE = YES
+SOURCE_TOOLTIPS        = YES
+USE_HTAGS              = NO
+VERBATIM_HEADERS       = NO
+ALPHABETICAL_INDEX     = NO
 COLS_IN_ALPHA_INDEX    = 5
 IGNORE_PREFIX          =
-#---------------------------------------------------------------------------
-# configuration options related to the HTML output
-#---------------------------------------------------------------------------
 GENERATE_HTML          = YES
 HTML_OUTPUT            = html
 HTML_FILE_EXTENSION    = .html
-
-#---------------------------------------------------------------------------
-# configuration options related to the LaTeX output
-#---------------------------------------------------------------------------
-GENERATE_LATEX         = NO
-#---------------------------------------------------------------------------
-# configuration options related to the RTF output
-#---------------------------------------------------------------------------
+HTML_HEADER            =
+HTML_FOOTER            =
+HTML_STYLESHEET        =
+HTML_EXTRA_STYLESHEET  =
+HTML_EXTRA_FILES       =
+HTML_COLORSTYLE_HUE    = 220
+HTML_COLORSTYLE_SAT    = 100
+HTML_COLORSTYLE_GAMMA  = 80
+HTML_TIMESTAMP         = YES
+HTML_DYNAMIC_SECTIONS  = NO
+HTML_INDEX_NUM_ENTRIES = 100
+GENERATE_DOCSET        = NO
+DOCSET_FEEDNAME        = "Doxygen generated docs"
+DOCSET_BUNDLE_ID       = org.doxygen.Project
+DOCSET_PUBLISHER_ID    = org.doxygen.Publisher
+DOCSET_PUBLISHER_NAME  = Publisher
+GENERATE_HTMLHELP      = NO
+CHM_FILE               =
+HHC_LOCATION           =
+GENERATE_CHI           = NO
+CHM_INDEX_ENCODING     =
+BINARY_TOC             = NO
+TOC_EXPAND             = NO
+GENERATE_QHP           = NO
+QCH_FILE               =
+QHP_NAMESPACE          = org.doxygen.Project
+QHP_VIRTUAL_FOLDER     = doc
+QHP_CUST_FILTER_NAME   =
+QHP_CUST_FILTER_ATTRS  =
+QHP_SECT_FILTER_ATTRS  =
+QHG_LOCATION           =
+GENERATE_ECLIPSEHELP   = NO
+ECLIPSE_DOC_ID         = org.doxygen.Project
+DISABLE_INDEX          = YES
+GENERATE_TREEVIEW      = YES
+ENUM_VALUES_PER_LINE   = 4
+TREEVIEW_WIDTH         = 250
+EXT_LINKS_IN_WINDOW    = YES
+FORMULA_FONTSIZE       = 10
+FORMULA_TRANSPARENT    = YES
+USE_MATHJAX            = NO
+MATHJAX_FORMAT         = HTML-CSS
+MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
+MATHJAX_EXTENSIONS     =
+MATHJAX_CODEFILE       =
+SEARCHENGINE           = YES
+SERVER_BASED_SEARCH    = NO
+EXTERNAL_SEARCH        = NO
+SEARCHENGINE_URL       =
+SEARCHDATA_FILE        = searchdata.xml
+EXTERNAL_SEARCH_ID     =
+EXTRA_SEARCH_MAPPINGS  =
+GENERATE_LATEX         = YES
+LATEX_OUTPUT           = latex
+LATEX_CMD_NAME         = latex
+MAKEINDEX_CMD_NAME     = makeindex
+COMPACT_LATEX          = NO
+PAPER_TYPE             = a4
+EXTRA_PACKAGES         =
+LATEX_HEADER           =
+LATEX_FOOTER           =
+LATEX_EXTRA_FILES      =
+PDF_HYPERLINKS         = YES
+USE_PDFLATEX           = YES
+LATEX_BATCHMODE        = NO
+LATEX_HIDE_INDICES     = NO
+LATEX_SOURCE_CODE      = NO
+LATEX_BIB_STYLE        = plain
 GENERATE_RTF           = NO
-#---------------------------------------------------------------------------
-# configuration options related to the man page output
-#---------------------------------------------------------------------------
+RTF_OUTPUT             = rtf
+COMPACT_RTF            = NO
+RTF_HYPERLINKS         = NO
+RTF_STYLESHEET_FILE    =
+RTF_EXTENSIONS_FILE    =
 GENERATE_MAN           = NO
-#---------------------------------------------------------------------------
-# configuration options related to the XML output
-#---------------------------------------------------------------------------
+MAN_OUTPUT             = man
+MAN_EXTENSION          = .3
+MAN_LINKS              = NO
 GENERATE_XML           = NO
-#---------------------------------------------------------------------------
-# configuration options for the AutoGen Definitions output
-#---------------------------------------------------------------------------
+XML_OUTPUT             = xml
+XML_PROGRAMLISTING     = YES
+GENERATE_DOCBOOK       = NO
+DOCBOOK_OUTPUT         = docbook
 GENERATE_AUTOGEN_DEF   = NO
-#---------------------------------------------------------------------------
-# configuration options related to the Perl module output
-#---------------------------------------------------------------------------
 GENERATE_PERLMOD       = NO
-#---------------------------------------------------------------------------
-# Configuration options related to the preprocessor
-#---------------------------------------------------------------------------
+PERLMOD_LATEX          = NO
+PERLMOD_PRETTY         = YES
+PERLMOD_MAKEVAR_PREFIX =
 ENABLE_PREPROCESSING   = YES
 MACRO_EXPANSION        = YES
-EXPAND_ONLY_PREDEF     = YES
-PREDEFINED             = CV_EXPORTS= CVAPI(x)=x __cplusplus=1
-SEARCH_INCLUDES        = NO
+EXPAND_ONLY_PREDEF     = NO
+SEARCH_INCLUDES        = YES
 INCLUDE_PATH           =
 INCLUDE_FILE_PATTERNS  =
+PREDEFINED             = CV_WRAP= \
+                         CV_WRAP_AS(x)= \
+                         __cplusplus=1 \
+                         CVAPI(x)=x \
+                         CV_PROP_RW= \
+                         CV_EXPORTS= \
+                         CV_EXPORTS_W=
 EXPAND_AS_DEFINED      =
 SKIP_FUNCTION_MACROS   = YES
-#---------------------------------------------------------------------------
-# Configuration::additions related to external references
-#---------------------------------------------------------------------------
 TAGFILES               =
 GENERATE_TAGFILE       =
 ALLEXTERNALS           = NO
 EXTERNAL_GROUPS        = YES
+EXTERNAL_PAGES         = YES
 PERL_PATH              = /usr/bin/perl
-#---------------------------------------------------------------------------
-# Configuration options related to the dot tool
-#---------------------------------------------------------------------------
 CLASS_DIAGRAMS         = YES
-HIDE_UNDOC_RELATIONS   = YES
+MSCGEN_PATH            =
+DIA_PATH               =
+HIDE_UNDOC_RELATIONS   = NO
 HAVE_DOT               = NO
+DOT_NUM_THREADS        = 0
+DOT_FONTNAME           = Helvetica
+DOT_FONTSIZE           = 10
+DOT_FONTPATH           =
 CLASS_GRAPH            = YES
 COLLABORATION_GRAPH    = YES
-UML_LOOK               = NO
+GROUP_GRAPHS           = YES
+UML_LOOK               = YES
+UML_LIMIT_NUM_FIELDS   = 10
 TEMPLATE_RELATIONS     = YES
 INCLUDE_GRAPH          = YES
 INCLUDED_BY_GRAPH      = YES
-CALL_GRAPH             = NO
+CALL_GRAPH             = YES
+CALLER_GRAPH           = NO
 GRAPHICAL_HIERARCHY    = YES
-DOT_IMAGE_FORMAT       = png
+DIRECTORY_GRAPH        = YES
+DOT_IMAGE_FORMAT       = svg
+INTERACTIVE_SVG        = YES
 DOT_PATH               =
 DOTFILE_DIRS           =
-MAX_DOT_GRAPH_WIDTH    = 1024
-MAX_DOT_GRAPH_HEIGHT   = 1024
+MSCFILE_DIRS           =
+DIAFILE_DIRS           =
+DOT_GRAPH_MAX_NODES    = 50
 MAX_DOT_GRAPH_DEPTH    = 0
+DOT_TRANSPARENT        = NO
+DOT_MULTI_TARGETS      = NO
 GENERATE_LEGEND        = YES
 DOT_CLEANUP            = YES
-#---------------------------------------------------------------------------
-# Configuration::additions related to the search engine
-#---------------------------------------------------------------------------
-SEARCHENGINE           = YES

doc/DoxygenLayout.xml

+<doxygenlayout version="1.0">
+  <!-- Generated by doxygen 1.8.6 -->
+  <!-- Navigation index tabs for HTML output -->
+  <navindex>
+    <tab type="mainpage" visible="yes" title=""/>
+    <tab type="pages" visible="yes" title="" intro=""/>
+    <tab type="modules" visible="yes" title="" intro=""/>
+    <tab type="namespaces" visible="yes" title="">
+      <tab type="namespacelist" visible="yes" title="" intro=""/>
+    </tab>
+    <tab type="classes" visible="yes" title="">
+      <tab type="classlist" visible="yes" title="" intro=""/>
+      <tab type="classindex" visible="$ALPHABETICAL_INDEX" title=""/>
+    </tab>
+    <tab type="files" visible="yes" title="">
+      <tab type="filelist" visible="yes" title="Files index" intro=""/>
+      <tab type="globals" visible="yes" title="Global objects" intro=""/>
+    </tab>
+    <tab type="examples" visible="yes" title="" intro=""/>
+  </navindex>
+
+  <!-- Layout definition for a class page -->
+  <class>
+    <briefdescription visible="yes"/>
+    <includes visible="$SHOW_INCLUDE_FILES"/>
+    <inheritancegraph visible="$CLASS_GRAPH"/>
+    <collaborationgraph visible="$COLLABORATION_GRAPH"/>
+    <memberdecl>
+      <nestedclasses visible="yes" title=""/>
+      <publictypes title=""/>
+      <services title=""/>
+      <interfaces title=""/>
+      <publicslots title=""/>
+      <signals title=""/>
+      <publicmethods title=""/>
+      <publicstaticmethods title=""/>
+      <publicattributes title=""/>
+      <publicstaticattributes title=""/>
+      <protectedtypes title=""/>
+      <protectedslots title=""/>
+      <protectedmethods title=""/>
+      <protectedstaticmethods title=""/>
+      <protectedattributes title=""/>
+      <protectedstaticattributes title=""/>
+      <packagetypes title=""/>
+      <packagemethods title=""/>
+      <packagestaticmethods title=""/>
+      <packageattributes title=""/>
+      <packagestaticattributes title=""/>
+      <properties title=""/>
+      <events title=""/>
+      <privatetypes title=""/>
+      <privateslots title=""/>
+      <privatemethods title=""/>
+      <privatestaticmethods title=""/>
+      <privateattributes title=""/>
+      <privatestaticattributes title=""/>
+      <friends title=""/>
+      <related title="" subtitle=""/>
+      <membergroups visible="yes"/>
+    </memberdecl>
+    <detaileddescription title=""/>
+    <memberdef>
+      <inlineclasses title=""/>
+      <typedefs title=""/>
+      <enums title=""/>
+      <services title=""/>
+      <interfaces title=""/>
+      <constructors title=""/>
+      <functions title=""/>
+      <related title=""/>
+      <variables title=""/>
+      <properties title=""/>
+      <events title=""/>
+    </memberdef>
+    <allmemberslink visible="yes"/>
+    <usedfiles visible="$SHOW_USED_FILES"/>
+    <authorsection visible="yes"/>
+  </class>
+
+  <!-- Layout definition for a namespace page -->
+  <namespace>
+    <briefdescription visible="yes"/>
+    <memberdecl>
+      <nestednamespaces visible="yes" title=""/>
+      <constantgroups visible="yes" title=""/>
+      <classes visible="yes" title=""/>
+      <typedefs title=""/>
+      <enums title=""/>
+      <functions title=""/>
+      <variables title=""/>
+      <membergroups visible="yes"/>
+    </memberdecl>
+    <detaileddescription title=""/>
+    <memberdef>
+      <inlineclasses title=""/>
+      <typedefs title=""/>
+      <enums title=""/>
+      <functions title=""/>
+      <variables title=""/>
+    </memberdef>
+    <authorsection visible="yes"/>
+  </namespace>
+
+  <!-- Layout definition for a file page -->
+  <file>
+    <briefdescription visible="yes"/>
+    <includes visible="$SHOW_INCLUDE_FILES"/>
+    <includegraph visible="$INCLUDE_GRAPH"/>
+    <includedbygraph visible="$INCLUDED_BY_GRAPH"/>
+    <sourcelink visible="yes"/>
+    <memberdecl>
+      <classes visible="yes" title=""/>
+      <namespaces visible="yes" title=""/>
+      <constantgroups visible="yes" title=""/>
+      <defines title=""/>
+      <typedefs title=""/>
+      <enums title=""/>
+      <functions title=""/>
+      <variables title=""/>
+      <membergroups visible="yes"/>
+    </memberdecl>
+    <detaileddescription title=""/>
+    <memberdef>
+      <inlineclasses title=""/>
+      <defines title=""/>
+      <typedefs title=""/>
+      <enums title=""/>
+      <functions title=""/>
+      <variables title=""/>
+    </memberdef>
+    <authorsection/>
+  </file>
+
+  <!-- Layout definition for a group page -->
+  <group>
+    <briefdescription visible="yes"/>
+    <groupgraph visible="$GROUP_GRAPHS"/>
+    <memberdecl>
+      <nestedgroups visible="yes" title=""/>
+      <dirs visible="yes" title=""/>
+      <files visible="yes" title=""/>
+      <namespaces visible="yes" title=""/>
+      <classes visible="yes" title=""/>
+      <defines title=""/>
+      <typedefs title=""/>
+      <enums title=""/>
+      <enumvalues title=""/>
+      <functions title=""/>
+      <variables title=""/>
+      <signals title=""/>
+      <publicslots title=""/>
+      <protectedslots title=""/>
+      <privateslots title=""/>
+      <events title=""/>
+      <properties title=""/>
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+</doxygenlayout>

modules/contrib/include/opencv2/contrib/contrib.hpp

@@ -664,6 +664,7 @@ namespace cv
         *\param center the transformation center: where the output precision is maximal
         *\param R the number of rings of the cortical image (default value 70 pixel)
         *\param ro0 the radius of the blind spot (default value 3 pixel)
+        *\param interp interpolation algorithm
         *\param full \a 1 (default value) means that the retinal image (the inverse transform) is computed within the circumscribing circle.
         *            \a 0 means that the retinal image is computed within the inscribed circle.
         *\param S the number of sectors of the cortical image (default value 70 pixel).

modules/contrib/include/opencv2/contrib/retina.hpp

@@ -88,7 +88,7 @@ enum RETINA_COLORSAMPLINGMETHOD
 class RetinaFilter;
 
 /**
- * @class Retina a wrapper class which allows the Gipsa/Listic Labs model to be used.
+ * a wrapper class which allows the Gipsa/Listic Labs model to be used.
  * This retina model allows spatio-temporal image processing (applied on still images, video sequences).
  * As a summary, these are the retina model properties:
  * => It applies a spectral whithening (mid-frequency details enhancement)
@@ -199,7 +199,6 @@ public:
      * => if the xml file does not exist, then default setup is applied
      * => warning, Exceptions are thrown if read XML file is not valid
      * @param newParameters : a parameters structures updated with the new target configuration
-         * @param applyDefaultSetupOnFailure : set to true if an error must be thrown on error
      */
     void setup(RetinaParameters newParameters);
 
@@ -216,7 +215,7 @@ public:
 
     /**
      * write xml/yml formated parameters information
-     * @rparam fs : the filename of the xml file that will be open and writen with formatted parameters information
+     * @param fs : the filename of the xml file that will be open and writen with formatted parameters information
      */
     virtual void write( std::string fs ) const;
 

modules/core/include/opencv2/core/affine.hpp

@@ -48,6 +48,8 @@
 
 #include <opencv2/core/core.hpp>
 
+/*! @file */
+
 namespace cv
 {
     template<typename T>
@@ -429,6 +431,7 @@ cv::Affine3<Y> cv::Affine3<T>::cast() const
     return Affine3<Y>(matrix);
 }
 
+/** @cond IGNORED */
 template<typename T> inline
 cv::Affine3<T> cv::operator*(const cv::Affine3<T>& affine1, const cv::Affine3<T>& affine2)
 {
@@ -446,6 +449,7 @@ V cv::operator*(const cv::Affine3<T>& affine, const V& v)
     r.z = m.val[8] * v.x + m.val[9] * v.y + m.val[10] * v.z + m.val[11];
     return r;
 }
+/** @endcond */
 
 static inline
 cv::Vec3f cv::operator*(const cv::Affine3f& affine, const cv::Vec3f& v)

modules/core/include/opencv2/core/core.hpp

@@ -716,9 +716,6 @@ public:
 };
 
 
-/*!
-  \typedef
-*/
 typedef Complex<float> Complexf;
 typedef Complex<double> Complexd;
 
@@ -885,11 +882,6 @@ public:
 };
 
 
-/*!
-  \typedef
-
-  shorter aliases for the most popular cv::Point_<>, cv::Size_<> and cv::Rect_<> specializations
-*/
 typedef Point_<int> Point2i;
 typedef Point2i Point;
 typedef Size_<int> Size2i;
@@ -1623,8 +1615,6 @@ public:
    cv::Mat::step that is used to actually compute address of a matrix element. cv::Mat::step is needed because the matrix can be
    a part of another matrix or because there can some padding space in the end of each row for a proper alignment.
 
-   \image html roi.png
-
    Given these parameters, address of the matrix element M_{ij} is computed as following:
 
    addr(M_{ij})=M.data + M.step*i + j*M.elemSize()
@@ -2266,7 +2256,7 @@ CV_EXPORTS_W void absdiff(InputArray src1, InputArray src2, OutputArray dst);
 //! set mask elements for those array elements which are within the element-specific bounding box (dst = lowerb <= src && src < upperb)
 CV_EXPORTS_W void inRange(InputArray src, InputArray lowerb,
                           InputArray upperb, OutputArray dst);
-//! compares elements of two arrays (dst = src1 <cmpop> src2)
+//! compares elements of two arrays (dst = src1 \<cmpop\> src2)
 CV_EXPORTS_W void compare(InputArray src1, InputArray src2, OutputArray dst, int cmpop);
 //! computes per-element minimum of two arrays (dst = min(src1, src2))
 CV_EXPORTS_W void min(InputArray src1, InputArray src2, OutputArray dst);
@@ -2731,7 +2721,7 @@ CV_EXPORTS_W Size getTextSize(const string& text, int fontFace,
 
  While cv::Mat is sufficient in most cases, cv::Mat_ can be more convenient if you use a lot of element
  access operations and if you know matrix type at compile time.
- Note that cv::Mat::at<_Tp>(int y, int x) and cv::Mat_<_Tp>::operator ()(int y, int x) do absolutely the
+ Note that cv::Mat::at\<_Tp\>(int y, int x) and cv::Mat_\<_Tp\>::operator ()(int y, int x) do absolutely the
  same thing and run at the same speed, but the latter is certainly shorter:
 
  \code
@@ -3443,6 +3433,7 @@ public:
     void convertTo( SparseMat& m, int rtype, double alpha=1 ) const;
     //! converts sparse matrix to dense n-dim matrix with optional type conversion and scaling.
     /*!
+      \param m Destination matrix
       \param rtype The output matrix data type. When it is =-1, the output array will have the same data type as (*this)
       \param alpha The scale factor
       \param beta The optional delta added to the scaled values before the conversion

modules/core/include/opencv2/core/gpumat.hpp

@@ -512,6 +512,7 @@ namespace cv { namespace gpu
         return *this;
     }
 
+    /** @cond IGNORED */
     template <class T> inline GpuMat::operator PtrStepSz<T>() const
     {
         return PtrStepSz<T>(rows, cols, (T*)data, step);
@@ -531,6 +532,7 @@ namespace cv { namespace gpu
     {
         return PtrStep_<T>(static_cast< DevMem2D_<T> >(*this));
     }
+    /** @endcond */
 
     inline GpuMat createContinuous(int rows, int cols, int type)
     {

modules/core/include/opencv2/core/operations.hpp

@@ -365,7 +365,7 @@ template<typename _Tp, int m, int n> inline double Matx<_Tp, m, n>::ddot(const M
 }
 
 
-
+/** @cond IGNORED */
 template<typename _Tp, int m, int n> inline
 Matx<_Tp,m,n> Matx<_Tp,m,n>::diag(const typename Matx<_Tp,m,n>::diag_type& d)
 {
@@ -374,6 +374,7 @@ Matx<_Tp,m,n> Matx<_Tp,m,n>::diag(const typename Matx<_Tp,m,n>::diag_type& d)
         M(i,i) = d(i, 0);
     return M;
 }
+/** @endcond */
 
 template<typename _Tp, int m, int n> inline
 Matx<_Tp,m,n> Matx<_Tp,m,n>::randu(_Tp a, _Tp b)

modules/features2d/include/opencv2/features2d/features2d.hpp

@@ -415,7 +415,7 @@ public:
          * @param orientationNormalized enable orientation normalization
          * @param scaleNormalized enable scale normalization
          * @param patternScale scaling of the description pattern
-         * @param nbOctave number of octaves covered by the detected keypoints
+         * @param nOctaves number of octaves covered by the detected keypoints
          * @param selectedPairs (optional) user defined selected pairs
     */
     explicit FREAK( bool orientationNormalized = true,
@@ -814,6 +814,8 @@ class CV_EXPORTS FastAdjuster: public AdjusterAdapter
 public:
     /**\param init_thresh the initial threshold to start with, default = 20
      * \param nonmax whether to use non max or not for fast feature detection
+     * \param min_thresh
+     * \param max_thresh
      */
     FastAdjuster(int init_thresh=20, bool nonmax=true, int min_thresh=1, int max_thresh=200);
 

modules/flann/include/opencv2/flann/dynamic_bitset.h

@@ -57,14 +57,14 @@ namespace cvflann {
 class DynamicBitset
 {
 public:
-    /** @param default constructor
+    /** default constructor
      */
     DynamicBitset()
     {
     }
 
-    /** @param only constructor we use in our code
-     * @param the size of the bitset (in bits)
+    /** only constructor we use in our code
+     * @param sz the size of the bitset (in bits)
      */
     DynamicBitset(size_t sz)
     {
@@ -87,7 +87,7 @@ public:
         return bitset_.empty();
     }
 
-    /** @param set all the bits to 0
+    /** set all the bits to 0
      */
     void reset()
     {
@@ -95,7 +95,7 @@ public:
     }
 
     /** @brief set one bit to 0
-     * @param
+     * @param index
      */
     void reset(size_t index)
     {
@@ -106,15 +106,15 @@ public:
      * This function is useful when resetting a given set of bits so that the
      * whole bitset ends up being 0: if that's the case, we don't care about setting
      * other bits to 0
-     * @param
+     * @param index
      */
     void reset_block(size_t index)
     {
         bitset_[index / cell_bit_size_] = 0;
     }
 
-    /** @param resize the bitset so that it contains at least size bits
-     * @param size
+    /** resize the bitset so that it contains at least sz bits
+     * @param sz
      */
     void resize(size_t sz)
     {
@@ -122,7 +122,7 @@ public:
         bitset_.resize(sz / cell_bit_size_ + 1);
     }
 
-    /** @param set a bit to true
+    /** set a bit to true
      * @param index the index of the bit to set to 1
      */
     void set(size_t index)
@@ -130,14 +130,14 @@ public:
         bitset_[index / cell_bit_size_] |= size_t(1) << (index % cell_bit_size_);
     }
 
-    /** @param gives the number of contained bits
+    /** gives the number of contained bits
      */
     size_t size() const
     {
         return size_;
     }
 
-    /** @param check if a bit is set
+    /** check if a bit is set
      * @param index the index of the bit to check
      * @return true if the bit is set
      */

modules/flann/include/opencv2/flann/lsh_table.h

@@ -152,9 +152,13 @@ public:
      * Create the mask and allocate the memory
      * @param feature_size is the size of the feature (considered as a ElementType[])
      * @param key_size is the number of bits that are turned on in the feature
+     * @param indices
      */
-    LshTable(unsigned int /*feature_size*/, unsigned int /*key_size*/, std::vector<size_t> & /*indices*/)
+    LshTable(unsigned int feature_size, unsigned int key_size, std::vector<size_t> & indices)
     {
+        (void)feature_size;
+        (void)key_size;
+        (void)indices;
         std::cerr << "LSH is not implemented for that type" << std::endl;
         assert(0);
     }

modules/flann/include/opencv2/flann/result_set.h

@@ -449,7 +449,7 @@ class RadiusUniqueResultSet : public UniqueResultSet<DistanceType>
 {
 public:
     /** Constructor
-     * @param capacity the number of neighbors to store at max
+     * @param radius the maximum distance of a neighbor
      */
     RadiusUniqueResultSet(DistanceType radius) :
         radius_(radius)
@@ -509,6 +509,7 @@ class KNNRadiusUniqueResultSet : public KNNUniqueResultSet<DistanceType>
 public:
     /** Constructor
      * @param capacity the number of neighbors to store at max
+     * @param radius the maximum distance of a neighbor
      */
     KNNRadiusUniqueResultSet(unsigned int capacity, DistanceType radius)
     {

modules/gpu/include/opencv2/gpu/gpu.hpp

@@ -537,7 +537,7 @@ CV_EXPORTS void log(const GpuMat& a, GpuMat& b, Stream& stream = Stream::Null())
 //! supports all, except depth == CV_64F
 CV_EXPORTS void pow(const GpuMat& src, double power, GpuMat& dst, Stream& stream = Stream::Null());
 
-//! compares elements of two arrays (c = a <cmpop> b)
+//! compares elements of two arrays (c = a \<cmpop\> b)
 CV_EXPORTS void compare(const GpuMat& a, const GpuMat& b, GpuMat& c, int cmpop, Stream& stream = Stream::Null());
 CV_EXPORTS void compare(const GpuMat& a, Scalar sc, GpuMat& c, int cmpop, Stream& stream = Stream::Null());
 
@@ -2264,6 +2264,7 @@ public:
      * model.
      * @param frame        Input frame
      * @param fgmask       Output mask image representing foreground and background pixels
+     * @param learningRate determines how quickly features are “forgotten” from histograms
      * @param stream       Stream for the asynchronous version
      */
     void operator ()(const GpuMat& frame, GpuMat& fgmask, float learningRate = -1.0f, Stream& stream = Stream::Null());

modules/video/include/opencv2/video/background_segm.hpp

@@ -218,6 +218,7 @@ public:
      * model.
      * @param image Input image
      * @param fgmask Output mask image representing foreground and background pixels
+     * @param learningRate Determines how quickly features are "forgotten" from histograms
      */
     virtual void operator()(InputArray image, OutputArray fgmask, double learningRate=-1.0);
 

modules/video/include/opencv2/video/tracking.hpp

@@ -258,7 +258,7 @@ CV_EXPORTS_W int meanShift( InputArray probImage, CV_OUT CV_IN_OUT Rect& window,
 /*!
  Kalman filter.
 
- The class implements standard Kalman filter \url{http://en.wikipedia.org/wiki/Kalman_filter}.
+ The class implements standard Kalman filter http://en.wikipedia.org/wiki/Kalman_filter.
  However, you can modify KalmanFilter::transitionMatrix, KalmanFilter::controlMatrix and
  KalmanFilter::measurementMatrix to get the extended Kalman filter functionality.
 */