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Commit 3e26086f authored by Maksim Shabunin's avatar Maksim Shabunin
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Reworked ML logistic regression implementation, initial version

parent 71770eb7
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Showing with 219 additions and 317 deletions
modules/ml/include/opencv2/ml.hpp
View file @ 3e26086f
......@@ -571,56 +571,43 @@ public:
/****************************************************************************************\
* Logistic Regression *
\****************************************************************************************/
struct CV_EXPORTS LogisticRegressionParams
{
double alpha;
int num_iters;
int norm;
int regularized;
int train_method;
int mini_batch_size;
cv::TermCriteria term_crit;
LogisticRegressionParams();
LogisticRegressionParams(double learning_rate, int iters, int train_method, int normlization, int reg, int mini_batch_size);
};
class CV_EXPORTS LogisticRegression
class CV_EXPORTS LogisticRegression : public StatModel
{
public:
LogisticRegression( const LogisticRegressionParams& params = LogisticRegressionParams());
LogisticRegression(cv::InputArray data_ip, cv::InputArray labels_ip, const LogisticRegressionParams& params);
virtual ~LogisticRegression();
class CV_EXPORTS Params
{
public:
Params(double learning_rate = 0.001,
int iters = 1000,
int method = LogisticRegression::BATCH,
int normlization = LogisticRegression::REG_L2,
int reg = 1,
int batch_size = 1);
double alpha;
int num_iters;
int norm;
int regularized;
int train_method;
int mini_batch_size;
cv::TermCriteria term_crit;
};
enum { REG_L1 = 0, REG_L2 = 1};
enum { BATCH = 0, MINI_BATCH = 1};
virtual bool train(cv::InputArray data_ip, cv::InputArray label_ip);
virtual void predict( cv::InputArray data, cv::OutputArray predicted_labels ) const;
virtual void write(FileStorage& fs) const;
virtual void read(const FileNode& fn);
// Algorithm interface
virtual void write( FileStorage &fs ) const = 0;
virtual void read( const FileNode &fn ) = 0;
const cv::Mat get_learnt_thetas() const;
virtual void clear();
protected:
LogisticRegressionParams params;
cv::Mat learnt_thetas;
std::string default_model_name;
std::map<int, int> forward_mapper;
std::map<int, int> reverse_mapper;
// StatModel interface
virtual bool train( const Ptr<TrainData>& trainData, int flags=0 ) = 0;
virtual float predict( InputArray samples, OutputArray results=noArray(), int flags=0 ) const = 0;
virtual void clear() = 0;
cv::Mat labels_o;
cv::Mat labels_n;
virtual Mat get_learnt_thetas() const = 0;
static cv::Mat calc_sigmoid(const cv::Mat& data);
virtual double compute_cost(const cv::Mat& data, const cv::Mat& labels, const cv::Mat& init_theta);
virtual cv::Mat compute_batch_gradient(const cv::Mat& data, const cv::Mat& labels, const cv::Mat& init_theta);
virtual cv::Mat compute_mini_batch_gradient(const cv::Mat& data, const cv::Mat& labels, const cv::Mat& init_theta);
virtual bool set_label_map(const cv::Mat& labels);
static cv::Mat remap_labels(const cv::Mat& labels, const std::map<int, int>& lmap);
static Ptr<LogisticRegression> create( const Params& params = Params() );
};
/****************************************************************************************\
......
modules/ml/src/lr.cpp
View file @ 3e26086f
......@@ -55,55 +55,72 @@
#include "precomp.hpp"
using namespace cv;
using namespace cv::ml;
using namespace std;
LogisticRegressionParams::LogisticRegressionParams()
{
term_crit = cv::TermCriteria(TermCriteria::COUNT + TermCriteria::EPS, 1000, 0.001);
alpha = 0.001;
num_iters = 1000;
norm = LogisticRegression::REG_L2;
regularized = 1;
train_method = LogisticRegression::BATCH;
mini_batch_size = 1;
}
LogisticRegressionParams::LogisticRegressionParams( double learning_rate, int iters, int train_algo = LogisticRegression::BATCH, int normlization = LogisticRegression::REG_L2, int reg = 1, int mb_size = 5)
namespace cv {
namespace ml {
LogisticRegression::Params::Params(double learning_rate,
int iters,
int method,
int normlization,
int reg,
int batch_size)
{
term_crit = cv::TermCriteria(TermCriteria::COUNT + TermCriteria::EPS, iters, learning_rate);
alpha = learning_rate;
num_iters = iters;
norm = normlization;
regularized = reg;
train_method = train_algo;
mini_batch_size = mb_size;
train_method = method;
mini_batch_size = batch_size;
term_crit = cv::TermCriteria(TermCriteria::COUNT + TermCriteria::EPS, num_iters, alpha);
}
LogisticRegression::LogisticRegression(const LogisticRegressionParams& pms)
class LogisticRegressionImpl : public LogisticRegression
{
default_model_name = "my_lr";
this->params = pms;
}
LogisticRegression::LogisticRegression(cv::InputArray data, cv::InputArray labels, const LogisticRegressionParams& pms)
{
default_model_name = "my_lr";
this->params = pms;
train(data, labels);
}
LogisticRegression::~LogisticRegression()
public:
LogisticRegressionImpl(const Params& pms)
: params(pms)
{
}
virtual ~LogisticRegressionImpl() {}
virtual bool train( const Ptr<TrainData>& trainData, int=0 );
virtual float predict(InputArray samples, OutputArray results, int) const;
virtual void clear();
virtual void write(FileStorage& fs) const;
virtual void read(const FileNode& fn);
virtual cv::Mat get_learnt_thetas() const;
virtual int getVarCount() const { return learnt_thetas.cols; }
virtual bool isTrained() const { return !learnt_thetas.empty(); }
virtual bool isClassifier() const { return true; }
virtual String getDefaultModelName() const { return "opencv_ml_lr"; }
protected:
cv::Mat calc_sigmoid(const cv::Mat& data) const;
double compute_cost(const cv::Mat& _data, const cv::Mat& _labels, const cv::Mat& _init_theta);
cv::Mat compute_batch_gradient(const cv::Mat& _data, const cv::Mat& _labels, const cv::Mat& _init_theta);
cv::Mat compute_mini_batch_gradient(const cv::Mat& _data, const cv::Mat& _labels, const cv::Mat& _init_theta);
bool set_label_map(const cv::Mat& _labels_i);
cv::Mat remap_labels(const cv::Mat& _labels_i, const map<int, int>& lmap) const;
protected:
Params params;
cv::Mat learnt_thetas;
map<int, int> forward_mapper;
map<int, int> reverse_mapper;
cv::Mat labels_o;
cv::Mat labels_n;
};
Ptr<LogisticRegression> LogisticRegression::create(const Params& params)
{
clear();
return makePtr<LogisticRegressionImpl>(params);
}
bool LogisticRegression::train(cv::InputArray data_ip, cv::InputArray labels_ip)
bool LogisticRegressionImpl::train(const Ptr<TrainData>& trainData, int)
{
clear();
cv::Mat _data_i = data_ip.getMat();
cv::Mat _labels_i = labels_ip.getMat();
cv::Mat _data_i = trainData->getSamples();
cv::Mat _labels_i = trainData->getResponses();
CV_Assert( !_labels_i.empty() && !_data_i.empty());
......@@ -194,13 +211,12 @@ bool LogisticRegression::train(cv::InputArray data_ip, cv::InputArray labels_ip)
return ok;
}
void LogisticRegression::predict( cv::InputArray _ip_data, cv::OutputArray _output_predicted_labels ) const
float LogisticRegressionImpl::predict(InputArray samples, OutputArray results, int) const
{
/* returns a class of the predicted class
class names can be 1,2,3,4, .... etc */
cv::Mat thetas, data, pred_labs;
data = _ip_data.getMat();
data = samples.getMat();
// check if learnt_mats array is populated
if(this->learnt_thetas.total()<=0)
......@@ -266,19 +282,20 @@ void LogisticRegression::predict( cv::InputArray _ip_data, cv::OutputArray _outp
pred_labs = remap_labels(labels_c, this->reverse_mapper);
// convert pred_labs to integer type
pred_labs.convertTo(pred_labs, CV_32S);
pred_labs.copyTo(_output_predicted_labels);
pred_labs.copyTo(results);
// TODO: determine
return 0;
}
cv::Mat LogisticRegression::calc_sigmoid(const Mat& data)
cv::Mat LogisticRegressionImpl::calc_sigmoid(const cv::Mat& data) const
{
cv::Mat dest;
cv::exp(-data, dest);
return 1.0/(1.0+dest);
}
double LogisticRegression::compute_cost(const cv::Mat& _data, const cv::Mat& _labels, const cv::Mat& _init_theta)
double LogisticRegressionImpl::compute_cost(const cv::Mat& _data, const cv::Mat& _labels, const cv::Mat& _init_theta)
{
int llambda = 0;
int m;
int n;
......@@ -328,7 +345,7 @@ double LogisticRegression::compute_cost(const cv::Mat& _data, const cv::Mat& _la
return cost;
}
cv::Mat LogisticRegression::compute_batch_gradient(const cv::Mat& _data, const cv::Mat& _labels, const cv::Mat& _init_theta)
cv::Mat LogisticRegressionImpl::compute_batch_gradient(const cv::Mat& _data, const cv::Mat& _labels, const cv::Mat& _init_theta)
{
// implements batch gradient descent
if(this->params.alpha<=0)
......@@ -397,7 +414,7 @@ cv::Mat LogisticRegression::compute_batch_gradient(const cv::Mat& _data, const c
return theta_p;
}
cv::Mat LogisticRegression::compute_mini_batch_gradient(const cv::Mat& _data, const cv::Mat& _labels, const cv::Mat& _init_theta)
cv::Mat LogisticRegressionImpl::compute_mini_batch_gradient(const cv::Mat& _data, const cv::Mat& _labels, const cv::Mat& _init_theta)
{
// implements batch gradient descent
int lambda_l = 0;
......@@ -488,7 +505,7 @@ cv::Mat LogisticRegression::compute_mini_batch_gradient(const cv::Mat& _data, co
return theta_p;
}
bool LogisticRegression::set_label_map(const cv::Mat& _labels_i)
bool LogisticRegressionImpl::set_label_map(const cv::Mat &_labels_i)
{
// this function creates two maps to map user defined labels to program friendly labels two ways.
int ii = 0;
......@@ -522,7 +539,7 @@ bool LogisticRegression::set_label_map(const cv::Mat& _labels_i)
return ok;
}
cv::Mat LogisticRegression::remap_labels(const Mat& _labels_i, const std::map<int, int>& lmap)
cv::Mat LogisticRegressionImpl::remap_labels(const cv::Mat& _labels_i, const map<int, int>& lmap) const
{
cv::Mat labels;
_labels_i.convertTo(labels, CV_32S);
......@@ -538,14 +555,14 @@ cv::Mat LogisticRegression::remap_labels(const Mat& _labels_i, const std::map<in
return new_labels;
}
void LogisticRegression::clear()
void LogisticRegressionImpl::clear()
{
this->learnt_thetas.release();
this->labels_o.release();
this->labels_n.release();
}
void LogisticRegression::write(FileStorage& fs) const
void LogisticRegressionImpl::write(FileStorage& fs) const
{
// check if open
if(fs.isOpened() == 0)
......@@ -568,7 +585,7 @@ void LogisticRegression::write(FileStorage& fs) const
fs<<"o_labels"<<this->labels_o;
}
void LogisticRegression::read(const FileNode& fn )
void LogisticRegressionImpl::read(const FileNode& fn)
{
// check if empty
if(fn.empty())
......@@ -598,8 +615,12 @@ void LogisticRegression::read(const FileNode& fn )
}
}
const cv::Mat LogisticRegression::get_learnt_thetas() const
cv::Mat LogisticRegressionImpl::get_learnt_thetas() const
{
return this->learnt_thetas;
}
}
}
/* End of file. */
modules/ml/test/test_lr.cpp
View file @ 3e26086f
......@@ -92,78 +92,29 @@ protected:
void CV_LRTest::run( int /*start_from*/ )
{
// initialize varibles from the popular Iris Dataset
Mat data = (Mat_<double>(150, 4)<<
5.1,3.5,1.4,0.2, 4.9,3.0,1.4,0.2, 4.7,3.2,1.3,0.2, 4.6,3.1,1.5,0.2,
5.0,3.6,1.4,0.2, 5.4,3.9,1.7,0.4, 4.6,3.4,1.4,0.3, 5.0,3.4,1.5,0.2,
4.4,2.9,1.4,0.2, 4.9,3.1,1.5,0.1, 5.4,3.7,1.5,0.2, 4.8,3.4,1.6,0.2,
4.8,3.0,1.4,0.1, 4.3,3.0,1.1,0.1, 5.8,4.0,1.2,0.2, 5.7,4.4,1.5,0.4,
5.4,3.9,1.3,0.4, 5.1,3.5,1.4,0.3, 5.7,3.8,1.7,0.3, 5.1,3.8,1.5,0.3,
5.4,3.4,1.7,0.2, 5.1,3.7,1.5,0.4, 4.6,3.6,1.0,0.2, 5.1,3.3,1.7,0.5,
4.8,3.4,1.9,0.2, 5.0,3.0,1.6,0.2, 5.0,3.4,1.6,0.4, 5.2,3.5,1.5,0.2,
5.2,3.4,1.4,0.2, 4.7,3.2,1.6,0.2, 4.8,3.1,1.6,0.2, 5.4,3.4,1.5,0.4,
5.2,4.1,1.5,0.1, 5.5,4.2,1.4,0.2, 4.9,3.1,1.5,0.1, 5.0,3.2,1.2,0.2,
5.5,3.5,1.3,0.2, 4.9,3.1,1.5,0.1, 4.4,3.0,1.3,0.2, 5.1,3.4,1.5,0.2,
5.0,3.5,1.3,0.3, 4.5,2.3,1.3,0.3, 4.4,3.2,1.3,0.2, 5.0,3.5,1.6,0.6,
5.1,3.8,1.9,0.4, 4.8,3.0,1.4,0.3, 5.1,3.8,1.6,0.2, 4.6,3.2,1.4,0.2,
5.3,3.7,1.5,0.2, 5.0,3.3,1.4,0.2, 7.0,3.2,4.7,1.4, 6.4,3.2,4.5,1.5,
6.9,3.1,4.9,1.5, 5.5,2.3,4.0,1.3, 6.5,2.8,4.6,1.5, 5.7,2.8,4.5,1.3,
6.3,3.3,4.7,1.6, 4.9,2.4,3.3,1.0, 6.6,2.9,4.6,1.3, 5.2,2.7,3.9,1.4,
5.0,2.0,3.5,1.0, 5.9,3.0,4.2,1.5, 6.0,2.2,4.0,1.0, 6.1,2.9,4.7,1.4,
5.6,2.9,3.6,1.3, 6.7,3.1,4.4,1.4, 5.6,3.0,4.5,1.5, 5.8,2.7,4.1,1.0,
6.2,2.2,4.5,1.5, 5.6,2.5,3.9,1.1, 5.9,3.2,4.8,1.8, 6.1,2.8,4.0,1.3,
6.3,2.5,4.9,1.5, 6.1,2.8,4.7,1.2, 6.4,2.9,4.3,1.3, 6.6,3.0,4.4,1.4,
6.8,2.8,4.8,1.4, 6.7,3.0,5.0,1.7, 6.0,2.9,4.5,1.5, 5.7,2.6,3.5,1.0,
5.5,2.4,3.8,1.1, 5.5,2.4,3.7,1.0, 5.8,2.7,3.9,1.2, 6.0,2.7,5.1,1.6,
5.4,3.0,4.5,1.5, 6.0,3.4,4.5,1.6, 6.7,3.1,4.7,1.5, 6.3,2.3,4.4,1.3,
5.6,3.0,4.1,1.3, 5.5,2.5,4.0,1.3, 5.5,2.6,4.4,1.2, 6.1,3.0,4.6,1.4,
5.8,2.6,4.0,1.2, 5.0,2.3,3.3,1.0, 5.6,2.7,4.2,1.3, 5.7,3.0,4.2,1.2,
5.7,2.9,4.2,1.3, 6.2,2.9,4.3,1.3, 5.1,2.5,3.0,1.1, 5.7,2.8,4.1,1.3,
6.3,3.3,6.0,2.5, 5.8,2.7,5.1,1.9, 7.1,3.0,5.9,2.1, 6.3,2.9,5.6,1.8,
6.5,3.0,5.8,2.2, 7.6,3.0,6.6,2.1, 4.9,2.5,4.5,1.7, 7.3,2.9,6.3,1.8,
6.7,2.5,5.8,1.8, 7.2,3.6,6.1,2.5, 6.5,3.2,5.1,2.0, 6.4,2.7,5.3,1.9,
6.8,3.0,5.5,2.1, 5.7,2.5,5.0,2.0, 5.8,2.8,5.1,2.4, 6.4,3.2,5.3,2.3,
6.5,3.0,5.5,1.8, 7.7,3.8,6.7,2.2, 7.7,2.6,6.9,2.3, 6.0,2.2,5.0,1.5,
6.9,3.2,5.7,2.3, 5.6,2.8,4.9,2.0, 7.7,2.8,6.7,2.0, 6.3,2.7,4.9,1.8,
6.7,3.3,5.7,2.1, 7.2,3.2,6.0,1.8, 6.2,2.8,4.8,1.8, 6.1,3.0,4.9,1.8,
6.4,2.8,5.6,2.1, 7.2,3.0,5.8,1.6, 7.4,2.8,6.1,1.9, 7.9,3.8,6.4,2.0,
6.4,2.8,5.6,2.2, 6.3,2.8,5.1,1.5, 6.1,2.6,5.6,1.4, 7.7,3.0,6.1,2.3,
6.3,3.4,5.6,2.4, 6.4,3.1,5.5,1.8, 6.0,3.0,4.8,1.8, 6.9,3.1,5.4,2.1,
6.7,3.1,5.6,2.4, 6.9,3.1,5.1,2.3, 5.8,2.7,5.1,1.9, 6.8,3.2,5.9,2.3,
6.7,3.3,5.7,2.5, 6.7,3.0,5.2,2.3, 6.3,2.5,5.0,1.9, 6.5,3.0,5.2,2.0,
6.2,3.4,5.4,2.3, 5.9,3.0,5.1,1.8);
Mat labels = (Mat_<int>(150, 1)<< 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
3, 3, 3, 3, 3);
string dataFileName = ts->get_data_path() + "iris.data";
Ptr<TrainData> tdata = TrainData::loadFromCSV(dataFileName, 0);
Mat responses1, responses2;
float error = 0.0f;
LogisticRegressionParams params1 = LogisticRegressionParams();
params1.alpha = 1.0;
params1.num_iters = 10001;
params1.norm = LogisticRegression::REG_L2;
params1.regularized = 1;
params1.train_method = LogisticRegression::BATCH;
params1.mini_batch_size = 10;
LogisticRegression::Params params = LogisticRegression::Params();
params.alpha = 1.0;
params.num_iters = 10001;
params.norm = LogisticRegression::REG_L2;
params.regularized = 1;
params.train_method = LogisticRegression::BATCH;
params.mini_batch_size = 10;
// run LR classifier train classifier
data.convertTo(data, CV_32FC1);
labels.convertTo(labels, CV_32FC1);
LogisticRegression lr1(data, labels, params1);
Ptr<LogisticRegression> p = LogisticRegression::create(params);
p->train(tdata);
// predict using the same data
lr1.predict(data, responses1);
int test_code = cvtest::TS::OK;
Mat responses;
p->predict(tdata->getSamples(), responses);
// calculate error
if(!calculateError(responses1, labels, error))
int test_code = cvtest::TS::OK;
float error = 0.0f;
if(!calculateError(responses, tdata->getResponses(), error))
{
ts->printf(cvtest::TS::LOG, "Bad prediction labels\n" );
test_code = cvtest::TS::FAIL_INVALID_OUTPUT;
......@@ -174,6 +125,14 @@ void CV_LRTest::run( int /*start_from*/ )
test_code = cvtest::TS::FAIL_BAD_ACCURACY;
}
{
FileStorage s("debug.xml", FileStorage::WRITE);
s << "original" << tdata->getResponses();
s << "predicted1" << responses;
s << "learnt" << p->get_learnt_thetas();
s << "error" << error;
s.release();
}
ts->set_failed_test_info(test_code);
}
......@@ -189,69 +148,16 @@ protected:
void CV_LRTest_SaveLoad::run( int /*start_from*/ )
{
int code = cvtest::TS::OK;
// initialize varibles from the popular Iris Dataset
Mat data = (Mat_<double>(150, 4)<<
5.1,3.5,1.4,0.2, 4.9,3.0,1.4,0.2, 4.7,3.2,1.3,0.2, 4.6,3.1,1.5,0.2,
5.0,3.6,1.4,0.2, 5.4,3.9,1.7,0.4, 4.6,3.4,1.4,0.3, 5.0,3.4,1.5,0.2,
4.4,2.9,1.4,0.2, 4.9,3.1,1.5,0.1, 5.4,3.7,1.5,0.2, 4.8,3.4,1.6,0.2,
4.8,3.0,1.4,0.1, 4.3,3.0,1.1,0.1, 5.8,4.0,1.2,0.2, 5.7,4.4,1.5,0.4,
5.4,3.9,1.3,0.4, 5.1,3.5,1.4,0.3, 5.7,3.8,1.7,0.3, 5.1,3.8,1.5,0.3,
5.4,3.4,1.7,0.2, 5.1,3.7,1.5,0.4, 4.6,3.6,1.0,0.2, 5.1,3.3,1.7,0.5,
4.8,3.4,1.9,0.2, 5.0,3.0,1.6,0.2, 5.0,3.4,1.6,0.4, 5.2,3.5,1.5,0.2,
5.2,3.4,1.4,0.2, 4.7,3.2,1.6,0.2, 4.8,3.1,1.6,0.2, 5.4,3.4,1.5,0.4,
5.2,4.1,1.5,0.1, 5.5,4.2,1.4,0.2, 4.9,3.1,1.5,0.1, 5.0,3.2,1.2,0.2,
5.5,3.5,1.3,0.2, 4.9,3.1,1.5,0.1, 4.4,3.0,1.3,0.2, 5.1,3.4,1.5,0.2,
5.0,3.5,1.3,0.3, 4.5,2.3,1.3,0.3, 4.4,3.2,1.3,0.2, 5.0,3.5,1.6,0.6,
5.1,3.8,1.9,0.4, 4.8,3.0,1.4,0.3, 5.1,3.8,1.6,0.2, 4.6,3.2,1.4,0.2,
5.3,3.7,1.5,0.2, 5.0,3.3,1.4,0.2, 7.0,3.2,4.7,1.4, 6.4,3.2,4.5,1.5,
6.9,3.1,4.9,1.5, 5.5,2.3,4.0,1.3, 6.5,2.8,4.6,1.5, 5.7,2.8,4.5,1.3,
6.3,3.3,4.7,1.6, 4.9,2.4,3.3,1.0, 6.6,2.9,4.6,1.3, 5.2,2.7,3.9,1.4,
5.0,2.0,3.5,1.0, 5.9,3.0,4.2,1.5, 6.0,2.2,4.0,1.0, 6.1,2.9,4.7,1.4,
5.6,2.9,3.6,1.3, 6.7,3.1,4.4,1.4, 5.6,3.0,4.5,1.5, 5.8,2.7,4.1,1.0,
6.2,2.2,4.5,1.5, 5.6,2.5,3.9,1.1, 5.9,3.2,4.8,1.8, 6.1,2.8,4.0,1.3,
6.3,2.5,4.9,1.5, 6.1,2.8,4.7,1.2, 6.4,2.9,4.3,1.3, 6.6,3.0,4.4,1.4,
6.8,2.8,4.8,1.4, 6.7,3.0,5.0,1.7, 6.0,2.9,4.5,1.5, 5.7,2.6,3.5,1.0,
5.5,2.4,3.8,1.1, 5.5,2.4,3.7,1.0, 5.8,2.7,3.9,1.2, 6.0,2.7,5.1,1.6,
5.4,3.0,4.5,1.5, 6.0,3.4,4.5,1.6, 6.7,3.1,4.7,1.5, 6.3,2.3,4.4,1.3,
5.6,3.0,4.1,1.3, 5.5,2.5,4.0,1.3, 5.5,2.6,4.4,1.2, 6.1,3.0,4.6,1.4,
5.8,2.6,4.0,1.2, 5.0,2.3,3.3,1.0, 5.6,2.7,4.2,1.3, 5.7,3.0,4.2,1.2,
5.7,2.9,4.2,1.3, 6.2,2.9,4.3,1.3, 5.1,2.5,3.0,1.1, 5.7,2.8,4.1,1.3,
6.3,3.3,6.0,2.5, 5.8,2.7,5.1,1.9, 7.1,3.0,5.9,2.1, 6.3,2.9,5.6,1.8,
6.5,3.0,5.8,2.2, 7.6,3.0,6.6,2.1, 4.9,2.5,4.5,1.7, 7.3,2.9,6.3,1.8,
6.7,2.5,5.8,1.8, 7.2,3.6,6.1,2.5, 6.5,3.2,5.1,2.0, 6.4,2.7,5.3,1.9,
6.8,3.0,5.5,2.1, 5.7,2.5,5.0,2.0, 5.8,2.8,5.1,2.4, 6.4,3.2,5.3,2.3,
6.5,3.0,5.5,1.8, 7.7,3.8,6.7,2.2, 7.7,2.6,6.9,2.3, 6.0,2.2,5.0,1.5,
6.9,3.2,5.7,2.3, 5.6,2.8,4.9,2.0, 7.7,2.8,6.7,2.0, 6.3,2.7,4.9,1.8,
6.7,3.3,5.7,2.1, 7.2,3.2,6.0,1.8, 6.2,2.8,4.8,1.8, 6.1,3.0,4.9,1.8,
6.4,2.8,5.6,2.1, 7.2,3.0,5.8,1.6, 7.4,2.8,6.1,1.9, 7.9,3.8,6.4,2.0,
6.4,2.8,5.6,2.2, 6.3,2.8,5.1,1.5, 6.1,2.6,5.6,1.4, 7.7,3.0,6.1,2.3,
6.3,3.4,5.6,2.4, 6.4,3.1,5.5,1.8, 6.0,3.0,4.8,1.8, 6.9,3.1,5.4,2.1,
6.7,3.1,5.6,2.4, 6.9,3.1,5.1,2.3, 5.8,2.7,5.1,1.9, 6.8,3.2,5.9,2.3,
6.7,3.3,5.7,2.5, 6.7,3.0,5.2,2.3, 6.3,2.5,5.0,1.9, 6.5,3.0,5.2,2.0,
6.2,3.4,5.4,2.3, 5.9,3.0,5.1,1.8);
Mat labels = (Mat_<int>(150, 1)<< 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
3, 3, 3, 3, 3);
// LogisticRegressionParams params = LogisticRegressionParams();
string dataFileName = ts->get_data_path() + "iris.data";
Ptr<TrainData> tdata = TrainData::loadFromCSV(dataFileName, 0);
Mat responses1, responses2;
Mat learnt_mat1, learnt_mat2;
Mat pred_result1, comp_learnt_mats;
float errorCount = 0.0;
LogisticRegressionParams params1 = LogisticRegressionParams();
LogisticRegressionParams params2 = LogisticRegressionParams();
LogisticRegression::Params params1 = LogisticRegression::Params();
params1.alpha = 1.0;
params1.num_iters = 10001;
params1.norm = LogisticRegression::REG_L2;
......@@ -259,56 +165,40 @@ void CV_LRTest_SaveLoad::run( int /*start_from*/ )
params1.train_method = LogisticRegression::BATCH;
params1.mini_batch_size = 10;
data.convertTo(data, CV_32FC1);
labels.convertTo(labels, CV_32FC1);
// run LR classifier train classifier
LogisticRegression lr1(data, labels, params1);
LogisticRegression lr2(params2);
learnt_mat1 = lr1.get_learnt_thetas();
lr1.predict(data, responses1);
// now save the classifier
string filename = cv::tempfile(".xml");
// train and save the classifier
String filename = cv::tempfile(".xml");
try
{
//lr1.save(filename.c_str());
FileStorage fs;
fs.open(filename.c_str(),FileStorage::WRITE);
lr1.write(fs);
fs.release();
// run LR classifier train classifier
Ptr<LogisticRegression> lr1 = LogisticRegression::create(params1);
lr1->train(tdata);
lr1->predict(tdata->getSamples(), responses1);
learnt_mat1 = lr1->get_learnt_thetas();
lr1->save(filename);
}
catch(...)
{
ts->printf(cvtest::TS::LOG, "Crash in write method.\n" );
ts->set_failed_test_info(cvtest::TS::FAIL_EXCEPTION);
}
// and load to another
try
{
//lr2.load(filename.c_str());
FileStorage fs;
fs.open(filename.c_str(),FileStorage::READ);
FileNode fn = fs.root();
lr2.read(fn);
fs.release();
Ptr<LogisticRegression> lr2 = StatModel::load<LogisticRegression>(filename);
lr2->predict(tdata->getSamples(), responses2);
learnt_mat2 = lr2->get_learnt_thetas();
}
catch(...)
{
ts->printf(cvtest::TS::LOG, "Crash in read method.\n");
ts->printf(cvtest::TS::LOG, "Crash in write method.\n" );
ts->set_failed_test_info(cvtest::TS::FAIL_EXCEPTION);
}
lr2.predict(data, responses2);
learnt_mat2 = lr2.get_learnt_thetas();
CV_Assert(responses1.rows == responses2.rows);
// compare difference in learnt matrices before and after loading from disk
Mat comp_learnt_mats;
comp_learnt_mats = (learnt_mat1 == learnt_mat2);
comp_learnt_mats = comp_learnt_mats.reshape(1, comp_learnt_mats.rows*comp_learnt_mats.cols);
comp_learnt_mats.convertTo(comp_learnt_mats, CV_32S);
......@@ -317,6 +207,7 @@ void CV_LRTest_SaveLoad::run( int /*start_from*/ )
// compare difference in prediction outputs and stored inputs
// check if there is any difference between computed learnt mat and retreived mat
float errorCount = 0.0;
errorCount += 1 - (float)cv::countNonZero(responses1 == responses2)/responses1.rows;
errorCount += 1 - (float)cv::sum(comp_learnt_mats)[0]/comp_learnt_mats.rows;
......
samples/cpp/logistic_regression.cpp
View file @ 3e26086f
///////////////////////////////////////////////////////////////////////////////////////
/*//////////////////////////////////////////////////////////////////////////////////////
// IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
// By downloading, copying, installing or using the software you agree to this license.
......@@ -11,7 +11,8 @@
// Rahul Kavi rahulkavi[at]live[at]com
//
// contains a subset of data from the popular Iris Dataset (taken from "http://archive.ics.uci.edu/ml/datasets/Iris")
// contains a subset of data from the popular Iris Dataset (taken from
// "http://archive.ics.uci.edu/ml/datasets/Iris")
// # You are free to use, change, or redistribute the code in any way you wish for
// # non-commercial purposes, but please maintain the name of the original author.
......@@ -24,7 +25,6 @@
// # Logistic Regression ALGORITHM
// License Agreement
// For Open Source Computer Vision Library
......@@ -54,7 +54,7 @@
// loss of use, data, or profits; or business interruption) however caused
// and on any theory of liability, whether in contract, strict liability,
// or tort (including negligence or otherwise) arising in any way out of
// the use of this software, even if advised of the possibility of such damage.
// the use of this software, even if advised of the possibility of such damage.*/
#include <iostream>
......@@ -62,42 +62,45 @@
#include <opencv2/ml/ml.hpp>
#include <opencv2/highgui/highgui.hpp>
using namespace std;
using namespace cv;
using namespace cv::ml;
int main()
{
Mat data_temp, labels_temp;
const String filename = "data01.xml";
cout << "**********************************************************************" << endl;
cout << filename
<< " contains digits 0 and 1 of 20 samples each, collected on an Android device" << endl;
cout << "Each of the collected images are of size 28 x 28 re-arranged to 1 x 784 matrix"
<< endl;
cout << "**********************************************************************" << endl;
Mat data, labels;
{
cout << "loading the dataset" << endl;
FileStorage f;
if(f.open(filename, FileStorage::READ))
{
f["datamat"] >> data;
f["labelsmat"] >> labels;
f.release();
}
else
{
cerr << "File can not be opened: " << filename << endl;
return 1;
}
data.convertTo(data, CV_32F);
labels.convertTo(labels, CV_32F);
cout << "read " << data.rows << " rows of data" << endl;
}
Mat data_train, data_test;
Mat labels_train, labels_test;
Mat responses, result;
FileStorage fs1, fs2;
FileStorage f;
cout<<"*****************************************************************************************"<<endl;
cout<<"\"data01.xml\" contains digits 0 and 1 of 20 samples each, collected on an Android device"<<endl;
cout<<"Each of the collected images are of size 28 x 28 re-arranged to 1 x 784 matrix"<<endl;
cout<<"*****************************************************************************************\n\n"<<endl;
cout<<"loading the dataset\n"<<endl;
f.open("data01.xml", FileStorage::READ);
f["datamat"] >> data_temp;
f["labelsmat"] >> labels_temp;
data_temp.convertTo(data, CV_32F);
labels_temp.convertTo(labels, CV_32F);
for(int i =0;i<data.rows;i++)
for(int i = 0; i < data.rows; i++)
{
if(i%2 ==0)
if(i % 2 == 0)
{
data_train.push_back(data.row(i));
labels_train.push_back(labels.row(i));
......@@ -108,66 +111,66 @@ int main()
labels_test.push_back(labels.row(i));
}
}
cout<<"training samples per class: "<<data_train.rows/2<<endl;
cout<<"testing samples per class: "<<data_test.rows/2<<endl;
cout << "training/testing samples count: " << data_train.rows << "/" << data_test.rows << endl;
// display sample image
Mat img_disp1 = data_train.row(2).reshape(0,28).t();
Mat img_disp2 = data_train.row(18).reshape(0,28).t();
imshow("digit 0", img_disp1);
imshow("digit 1", img_disp2);
cout<<"initializing Logisitc Regression Parameters\n"<<endl;
// LogisticRegressionParams params1 = LogisticRegressionParams(0.001, 10, LogisticRegression::BATCH, LogisticRegression::REG_L2, 1, 1);
// params1 (above) with batch gradient performs better than mini batch gradient below with same parameters
LogisticRegressionParams params1 = LogisticRegressionParams(0.001, 10, LogisticRegression::MINI_BATCH, LogisticRegression::REG_L2, 1, 1);
// Mat bigImage;
// for(int i = 0; i < data_train.rows; ++i)
// {
// bigImage.push_back(data_train.row(i).reshape(0, 28));
// }
// imshow("digits", bigImage.t());
// however mini batch gradient descent parameters with slower learning rate(below) can be used to get higher accuracy than with parameters mentioned above
// LogisticRegressionParams params1 = LogisticRegressionParams(0.000001, 10, LogisticRegression::MINI_BATCH, LogisticRegression::REG_L2, 1, 1);
cout<<"training Logisitc Regression classifier\n"<<endl;
Mat responses, result;
LogisticRegression lr1(data_train, labels_train, params1);
lr1.predict(data_test, responses);
// LogisticRegression::Params params = LogisticRegression::Params(
// 0.001, 10, LogisticRegression::BATCH, LogisticRegression::REG_L2, 1, 1);
// params1 (above) with batch gradient performs better than mini batch
// gradient below with same parameters
LogisticRegression::Params params = LogisticRegression::Params(
0.001, 10, LogisticRegression::MINI_BATCH, LogisticRegression::REG_L2, 1, 1);
// however mini batch gradient descent parameters with slower learning
// rate(below) can be used to get higher accuracy than with parameters
// mentioned above
// LogisticRegression::Params params = LogisticRegression::Params(
// 0.000001, 10, LogisticRegression::MINI_BATCH, LogisticRegression::REG_L2, 1, 1);
cout << "training...";
Ptr<StatModel> lr1 = LogisticRegression::create(params);
lr1->train(data_train, ROW_SAMPLE, labels_train);
cout << "done!" << endl;
cout << "predicting...";
lr1->predict(data_test, responses);
cout << "done!" << endl;
// show prediction report
cout << "original vs predicted:" << endl;
labels_test.convertTo(labels_test, CV_32S);
cout<<"Original Label :: Predicted Label"<<endl;
result = (labels_test == responses)/255;
for(int i=0;i<labels_test.rows;i++)
{
cout<<labels_test.at<int>(i,0)<<" :: "<< responses.at<int>(i,0)<<endl;
}
// calculate accuracy
cout<<"accuracy: "<<((double)cv::sum(result)[0]/result.rows)*100<<"%\n";
cout<<"saving the classifier"<<endl;
cout << labels_test.t() << endl;
cout << responses.t() << endl;
result = (labels_test == responses) / 255;
cout << "accuracy: " << ((double)cv::sum(result)[0] / result.rows) * 100 << "%\n";
// save the classfier
fs1.open("NewLR_Trained.xml",FileStorage::WRITE);
lr1.write(fs1);
fs1.release();
cout << "saving the classifier" << endl;
const String saveFilename = "NewLR_Trained.xml";
lr1->save(saveFilename);
// load the classifier onto new object
LogisticRegressionParams params2 = LogisticRegressionParams();
LogisticRegression lr2(params2);
cout<<"loading a new classifier"<<endl;
fs2.open("NewLR_Trained.xml",FileStorage::READ);
FileNode fn2 = fs2.root();
lr2.read(fn2);
fs2.release();
Mat responses2;
cout << "loading a new classifier" << endl;
Ptr<LogisticRegression> lr2 = StatModel::load<LogisticRegression>(saveFilename);
// predict using loaded classifier
cout<<"predicting the dataset using the loaded classfier\n"<<endl;
lr2.predict(data_test, responses2);
cout << "predicting the dataset using the loaded classfier" << endl;
Mat responses2;
lr2->predict(data_test, responses2);
// calculate accuracy
cout<<"accuracy using loaded classifier: "<<100 * (float)cv::countNonZero(labels_test == responses2)/responses2.rows<<"%"<<endl;
waitKey(0);
cout << "accuracy using loaded classifier: "
<< 100 * (float)cv::countNonZero(labels_test == responses2) / responses2.rows << "%"
<< endl;
waitKey(0);
return 0;
}
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